Alternatives and similar repositories for Bruker_PrairieLink

Users that are interested in Bruker_PrairieLink are comparing it to the libraries listed below

• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆62Updated 2 years ago
• NTCColumbia / moco
  motion correction
  ☆17Updated 2 years ago
• nel-lab / mesmerize-core
  High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
  ☆70Updated 4 months ago
• petersaj / AP_histology
  Histology processing
  ☆71Updated 3 weeks ago
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆157Updated last month
• Whitlock-Group / HERBS
  ☆52Updated last year
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆97Updated last year
• CaliAli-PV / CaliAli
  Calcium imaging inter-session alignment
  ☆15Updated 3 weeks ago
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆55Updated 2 years ago
• MLspike / spikes
  spike extraction from calcium signals (Deneux et al., 2016)
  ☆34Updated 5 years ago
• VirtualBrainLab / Pinpoint
  Multi-probe trajectory planning in an intuitive 3D environment
  ☆56Updated last week
• porteralab / EZcalcium
  Calcium Data Extraction and Analysis
  ☆49Updated 3 years ago
• ransona / ROIMatchPub
  Match suite2p ROIs between imaging sessions
  ☆27Updated 6 years ago
• mikarubi / voluseg
  pipeline for volumetric cell segmentation
  ☆13Updated last week
• DeNardoLab / BehaviorDEPOT
  Repository for BehaviorDEPOT pipeline app files and source code
  ☆38Updated last year
• llerussell / Naparm
  Control and design of two-photon photostimulation experiments
  ☆17Updated 2 years ago
• flatironinstitute / neurosift
  Browser-based NWB visualization and DANDI exploration
  ☆62Updated last month
• cwindolf / dartsort
  ☆27Updated last week
• gardner-lab / FinchScope
  Single photon tools for Neuroscience
  ☆36Updated 2 months ago
• sanworks / Bpod_Gen2
  Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)
  ☆40Updated 3 weeks ago
• SWC-Advanced-Microscopy / BakingTray
  Serial-section automated anatomy extension for ScanImage
  ☆17Updated 2 months ago
• ryhattori / PatchWarp
  Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.
  ☆26Updated 2 years ago
• zivlab / CellReg
  Registration of cells across sessions.
  ☆75Updated last year
• petersaj / neuropixels_trajectory_explorer
  Neuropixels trajectory explorer with the Allen CCF mouse atlas
  ☆79Updated 8 months ago
• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆99Updated last year
• paninski-lab / funimag
  Compression, denoising and demixing of functional imaging recordings
  ☆28Updated 7 years ago
• SpikeInterface / probeinterface_library
  Collection of probe description for probeinterface
  ☆17Updated this week
• apasarkar / jnormcorre
  Jax implementation of normcorre
  ☆12Updated 11 months ago
• brainglobe / brainglobe-heatmap
  Rendering anatomical heatmaps with brainrender and matplotlib
  ☆46Updated this week
• billkarsh / SpikeGLX
  SpikeGLX recording system GUI [Neuropixels NI]
  ☆100Updated this week