benchmarking challenge for finding neurons in imaging data
☆76Apr 10, 2019Updated 7 years ago
Alternatives and similar repositories for neurofinder
Users that are interested in neurofinder are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)☆29Dec 8, 2022Updated 3 years ago
- Interactive notebooks for trying analyses and exploring datasets☆32Aug 10, 2015Updated 10 years ago
- Calcium Data Extraction and Analysis☆49Dec 5, 2022Updated 3 years ago
- This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular …☆26Aug 18, 2018Updated 7 years ago
- ☆17May 26, 2023Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- dataset info for the neurofinder challenge☆13Aug 3, 2016Updated 9 years ago
- Adaptive Memory Prediction Framework☆15Apr 19, 2015Updated 11 years ago
- Automatic cell detection in microscopy data using convolutional networks☆34Nov 22, 2022Updated 3 years ago
- Analysis code for the results of the spikefinder challenge☆12Feb 19, 2018Updated 8 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆100Nov 14, 2024Updated last year
- cell detection in calcium imaging recordings☆448May 3, 2026Updated 3 weeks ago
- Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…☆721Apr 16, 2026Updated last month
- Registration of cells across sessions.☆78Aug 20, 2024Updated last year
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆153Aug 2, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆42Sep 29, 2021Updated 4 years ago
- motion correction☆17Jan 27, 2023Updated 3 years ago
- Complete Matlab pipeline for large scale calcium imaging data analysis☆261Jul 4, 2023Updated 2 years ago
- Fitting and simulation of Poisson generalized linear model for single and multi-neuron spike trains (Pillow et al 2008).☆43Jul 23, 2019Updated 6 years ago
- Tools for working with single-neuron morphological reconstructions☆22Apr 16, 2026Updated last month
- Get going with contributing to open source software☆10Nov 21, 2015Updated 10 years ago
- QPBO interface and alpha expansion for Python☆24Nov 3, 2022Updated 3 years ago
- Analysis package for miniscope data☆15Dec 6, 2022Updated 3 years ago
- 1137 Dandisets, 965.2 TB total. DataLad super-dataset of all Dandisets from https://github.com/dandisets☆14Updated this week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Recordings of 10k neurons during spontaneous behaviors☆54Mar 22, 2024Updated 2 years ago
- Read images to numpy arrays☆72Aug 3, 2024Updated last year
- Tools for processing 2P recordings☆133Oct 9, 2023Updated 2 years ago
- non-parametric inference for convolutional filters in poisson glms☆13Sep 20, 2021Updated 4 years ago
- Mesoscale activity ephys ingest schema☆11Jul 18, 2023Updated 2 years ago
- Denoising and Demixing Pipeline for in vivo Voltage Imaging Data (SGPMD-NMF)☆15Apr 24, 2023Updated 3 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆161May 8, 2026Updated 2 weeks ago
- Algorithm for automated source extraction from 1P data☆23Jun 16, 2023Updated 2 years ago
- A Python implementation of fast non-negative deconvolution☆23Oct 22, 2019Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- GUI to compute and explore receptive fields, primarily from calcium imaging recordings☆13Jun 26, 2021Updated 4 years ago
- ☆58Mar 4, 2025Updated last year
- This package provides Python libNeuroML, for working with neuronal models specified in NeuroML☆45May 18, 2026Updated last week
- Flow-Registration toolbox for 2P motion compensation☆27Sep 16, 2025Updated 8 months ago
- Seeded Iterative Demixing (SID) of neuronal activity recordings made using Light Field Microscopy (LFM)☆28Feb 26, 2020Updated 6 years ago
- Matlab routines for online non-rigid motion correction of calcium imaging data☆156May 29, 2022Updated 3 years ago
- Legacy project superseded by https://github.com/morphonets/SNT☆13Jul 19, 2021Updated 4 years ago