benchmarking challenge for finding neurons in imaging data
☆77Apr 10, 2019Updated 7 years ago
Alternatives and similar repositories for neurofinder
Users that are interested in neurofinder are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆68Sep 12, 2019Updated 6 years ago
- Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)☆29Dec 8, 2022Updated 3 years ago
- Interactive notebooks for trying analyses and exploring datasets☆32Aug 10, 2015Updated 10 years ago
- ☆18May 26, 2023Updated 3 years ago
- This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular …☆27Aug 18, 2018Updated 7 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- dataset info for the neurofinder challenge☆13Aug 3, 2016Updated 9 years ago
- Automatic cell detection in microscopy data using convolutional networks☆34Nov 22, 2022Updated 3 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆101Nov 14, 2024Updated last year
- Analysis code for the results of the spikefinder challenge☆12Feb 19, 2018Updated 8 years ago
- Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…☆726Jun 27, 2026Updated last month
- Registration of cells across sessions.☆78Jul 2, 2026Updated 3 weeks ago
- Pre-processing pipeline for widefield data☆13Dec 11, 2020Updated 5 years ago
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆151Aug 2, 2024Updated last year
- ☆42Sep 29, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Complete Matlab pipeline for large scale calcium imaging data analysis☆262Jul 4, 2023Updated 3 years ago
- motion correction☆17Jan 27, 2023Updated 3 years ago
- Fitting and simulation of Poisson generalized linear model for single and multi-neuron spike trains (Pillow et al 2008).☆43Jul 23, 2019Updated 7 years ago
- QPBO interface and alpha expansion for Python☆24Nov 3, 2022Updated 3 years ago
- Tools for working with single-neuron morphological reconstructions☆22Apr 16, 2026Updated 3 months ago
- Get going with contributing to open source software☆10Nov 21, 2015Updated 10 years ago
- 1140 Dandisets, 965.1 TB total. DataLad super-dataset of all Dandisets from https://github.com/dandisets☆14May 28, 2026Updated 2 months ago
- Analysis package for miniscope data☆14Dec 6, 2022Updated 3 years ago
- Recordings of 10k neurons during spontaneous behaviors☆55Mar 22, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- up-to-date code for model-based inference of spike trains from calcium imaging☆24Apr 16, 2018Updated 8 years ago
- Tools for processing 2P recordings☆132Oct 9, 2023Updated 2 years ago
- Read images to numpy arrays☆71Aug 3, 2024Updated last year
- Mesoscale activity ephys ingest schema☆11Jul 18, 2023Updated 3 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆166May 29, 2026Updated 2 months ago
- non-parametric inference for convolutional filters in poisson glms☆13Sep 20, 2021Updated 4 years ago
- Denoising and Demixing Pipeline for in vivo Voltage Imaging Data (SGPMD-NMF)☆15Apr 24, 2023Updated 3 years ago
- HNCcorr algorithm for neuron identification in calcium imaging datasets.☆11Feb 11, 2023Updated 3 years ago
- Algorithm for automated source extraction from 1P data☆24Jun 16, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A Python implementation of fast non-negative deconvolution☆23Oct 22, 2019Updated 6 years ago
- GUI to compute and explore receptive fields, primarily from calcium imaging recordings☆13Jun 26, 2021Updated 5 years ago
- Matlab routines for online non-rigid motion correction of calcium imaging data☆159May 29, 2022Updated 4 years ago
- Flow-Registration toolbox for 2P motion compensation☆27Sep 16, 2025Updated 10 months ago
- ☆58Mar 4, 2025Updated last year
- Website for the MIT/Harvard Computational Neuroscience Journal Club☆11Apr 7, 2025Updated last year
- Legacy project superseded by https://github.com/morphonets/SNT☆13Jul 19, 2021Updated 5 years ago