benchmarking challenge for finding neurons in imaging data
☆77Apr 10, 2019Updated 7 years ago
Alternatives and similar repositories for neurofinder
Users that are interested in neurofinder are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆68Sep 12, 2019Updated 6 years ago
- Interactive notebooks for trying analyses and exploring datasets☆32Aug 10, 2015Updated 11 years ago
- Calcium Data Extraction and Analysis☆50Dec 5, 2022Updated 3 years ago
- This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular …☆27Aug 18, 2018Updated 8 years ago
- ☆18May 26, 2023Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Adaptive Memory Prediction Framework☆15Apr 19, 2015Updated 11 years ago
- Automatic cell detection in microscopy data using convolutional networks☆34Nov 22, 2022Updated 3 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆102Nov 14, 2024Updated last year
- Analysis code for the results of the spikefinder challenge☆12Feb 19, 2018Updated 8 years ago
- cell detection in calcium imaging recordings☆471Aug 23, 2026Updated 2 weeks ago
- Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…☆734Aug 2, 2026Updated last month
- Python package for analysis of dynamic fluorescence microscopy data☆105Mar 14, 2019Updated 7 years ago
- Registration of cells across sessions.☆79Jul 2, 2026Updated 2 months ago
- Pre-processing pipeline for widefield data☆13Dec 11, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆153Aug 2, 2024Updated 2 years ago
- ☆43Sep 29, 2021Updated 4 years ago
- Complete Matlab pipeline for large scale calcium imaging data analysis☆261Jul 4, 2023Updated 3 years ago
- motion correction☆17Jan 27, 2023Updated 3 years ago
- Fitting and simulation of Poisson generalized linear model for single and multi-neuron spike trains (Pillow et al 2008).☆43Jul 23, 2019Updated 7 years ago
- QPBO interface and alpha expansion for Python☆24Nov 3, 2022Updated 3 years ago
- Get going with contributing to open source software☆10Nov 21, 2015Updated 10 years ago
- 1209 Dandisets, 1.0 PB total. DataLad super-dataset of all Dandisets from https://github.com/dandisets☆15Updated this week
- Analysis package for miniscope data☆14Dec 6, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Recordings of 10k neurons during spontaneous behaviors☆55Aug 12, 2026Updated 3 weeks ago
- up-to-date code for model-based inference of spike trains from calcium imaging☆24Apr 16, 2018Updated 8 years ago
- Tools for processing 2P recordings☆132Oct 9, 2023Updated 2 years ago
- Read images to numpy arrays☆71Aug 3, 2024Updated 2 years ago
- Mesoscale activity ephys ingest schema☆11Jul 18, 2023Updated 3 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆169Updated this week
- non-parametric inference for convolutional filters in poisson glms☆13Sep 20, 2021Updated 4 years ago
- Denoising and Demixing Pipeline for in vivo Voltage Imaging Data (SGPMD-NMF)☆15Apr 24, 2023Updated 3 years ago
- HNCcorr algorithm for neuron identification in calcium imaging datasets.☆11Feb 11, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Algorithm for automated source extraction from 1P data☆24Jun 16, 2023Updated 3 years ago
- A Python implementation of fast non-negative deconvolution