Alternatives and similar repositories for AllenSDK:

Users that are interested in AllenSDK are comparing it to the libraries listed below

• AllenInstitute / bmtk
  Brain Modeling Toolkit
  ☆279Updated last month
• MouseLand / suite2p
  cell detection in calcium imaging recordings
  ☆368Updated 2 weeks ago
• BlueBrain / NeuroM
  Neuronal Morphology Analysis Tool
  ☆102Updated 3 months ago
• NeurodataWithoutBorders / pynwb
  A Python API for working with Neurodata stored in the NWB Format
  ☆182Updated last week
• NeuralEnsemble / python-neo
  Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology fil…
  ☆333Updated this week
• MouseLand / rastermap
  a visualization method for neural data
  ☆202Updated 3 months ago
• cortex-lab / phy
  phy: interactive visualization and manual spike sorting of large-scale ephys data
  ☆332Updated 5 months ago
• cortex-lab / Suite2P
  Tools for processing 2P recordings
  ☆124Updated last year
• cortex-lab / allenCCF
  Tools to work with Allen Inst CCF data in matlab
  ☆127Updated 10 months ago
• brainglobe / brainreg
  Automated 3D brain registration with support for multiple species and atlases.
  ☆128Updated this week
• brainglobe / brainglobe-atlasapi
  A Python interface to access neuroanatomical atlases
  ☆128Updated this week
• NeuralEnsemble / elephant
  Elephant is the Electrophysiology Analysis Toolkit
  ☆205Updated this week
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆127Updated 2 weeks ago
• PhABC / neuroSummerSchools
  List of summer schools in neuroscience and related fields
  ☆216Updated 5 years ago
• MouseLand / Kilosort
  Fast spike sorting with drift correction
  ☆497Updated this week
• brainglobe / cellfinder
  Automated 3D cell detection in very large images
  ☆181Updated this week
• JustasB / hoc2swc
  Converter for NEURON simulator HOC files to SWC
  ☆12Updated 4 years ago
• cortex-lab / KiloSort
  GPU code for spike sorting
  ☆180Updated 11 months ago
• NeurodataWithoutBorders / nwb-schema
  Data format specification schema for the NWB neurophysiology data format
  ☆54Updated last week
• flatironinstitute / CaImAn
  Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…
  ☆646Updated this week
• nel-lab / mesmerize-core
  High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
  ☆62Updated 2 months ago
• zivlab / CellReg
  Registration of cells across sessions.
  ☆71Updated 4 months ago
• AllenInstitute / ecephys_spike_sorting
  Modules for processing extracellular electrophysiology data from Neuropixels probes
  ☆110Updated 5 months ago
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆45Updated last year
• pynapple-org / pynapple
  PYthon Neural Analysis Package
  ☆289Updated this week
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆61Updated last year
• BlueBrain / eFEL
  Electrophys Feature Extraction Library
  ☆69Updated last month
• zhoupc / CNMF_E
  Constrained Nonnegative Matrix Factorization for microEndoscopic data
  ☆143Updated 5 months ago
• AllenInstitute / openscope_databook
  OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁…
  ☆64Updated this week
• open-ephys / analysis-tools
  Archived code for reading data saved by the Open Ephys GUI
  ☆59Updated last year