code for reading and processing Allen Institute for Brain Science data
☆402Jul 6, 2026Updated 3 months ago
Alternatives and similar repositories for AllenSDK
Users that are interested in AllenSDK are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Python API for working with Neurodata stored in the NWB Format☆225Oct 20, 2026Updated 2 weeks ago
- Python package providing mesoscale connectivity models for mouse.☆40Apr 3, 2024Updated 2 years ago
- Brain Modeling Toolkit☆339Oct 27, 2026Updated last week
- Python package for analyzing behavioral data for Brain Observatory: Visual Behavior☆26Jul 3, 2026Updated 4 months ago
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆131Aug 18, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Pipelines and modules for processing optical physiology data☆11Dec 20, 2024Updated last year
- Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…☆741Oct 12, 2026Updated 3 weeks ago
- cell detection in calcium imaging recordings☆475Sep 12, 2026Updated last month
- Data format specification schema for the NWB neurophysiology data format☆67Aug 21, 2026Updated 2 months ago
- Tools to work with Allen Inst CCF data in matlab☆155Jul 15, 2025Updated last year
- A Python interface to access neuroanatomical atlases☆190Oct 26, 2026Updated last week
- Numerical solver for coupled population density equations☆27Jul 6, 2023Updated 3 years ago
- Collaboration between BBP and AIBS☆69Nov 24, 2025Updated 11 months ago
- computes intrinsic cell features from intracellular electrophysiology data☆31Aug 14, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Fast spike sorting with drift correction☆636Sep 25, 2026Updated last month
- A Python package to visualise neuroanatomical data in atlas space☆682Oct 13, 2026Updated 3 weeks ago
- PYthon Neural Analysis Package☆382Oct 24, 2026Updated last week
- IBL core shared libraries☆69Oct 23, 2026Updated last week
- Elephant is the Electrophysiology Analysis Toolkit☆244Oct 21, 2026Updated last week
- ☆224Jun 3, 2024Updated 2 years ago
- waveform classification with recordings from mouse brain using Neuropixels probes☆21Sep 29, 2022Updated 4 years ago
- Acquiring images from allen brain atlas, mouse ISH experiments in R.☆17Mar 20, 2024Updated 2 years ago
- Automated 3D cell detection in very large images☆232Oct 23, 2026Updated last week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆171Oct 27, 2026Updated last week
- ☆13Oct 10, 2019Updated 7 years ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆53Oct 20, 2026Updated 2 weeks ago
- OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁…☆76Oct 27, 2026Updated last week
- Access the Allen Brain Atlas API from MATLAB☆10Oct 15, 2017Updated 9 years ago
- Electrophys Feature Extraction Library☆78Feb 26, 2025Updated last year
- phy: interactive visualization and manual spike sorting of large-scale ephys data☆435Updated this week
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆134Sep 8, 2026Updated last month
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆13Nov 26, 2020Updated 5 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Dimensionality-reduction and classification for morphology and electrophysiology☆12Sep 23, 2024Updated 2 years ago
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.☆81Updated this week
- Tools for working with single-neuron morphological reconstructions☆22Apr 16, 2026Updated 6 months ago
- Creating the code base for All-active Model generation written on top of Bluepyopt☆17Dec 1, 2020Updated 5 years ago
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆68Sep 12, 2019Updated 7 years ago
- Neuronal Morphology Analysis Tool☆109Feb 26, 2025Updated last year
- Code for internal lab sharing - polishing has started but is by no means complete☆140Oct 1, 2026Updated last month