AllenInstitute / AllenSDK
code for reading and processing Allen Institute for Brain Science data
☆347Updated 10 months ago
Related projects ⓘ
Alternatives and complementary repositories for AllenSDK
- Brain Modeling Toolkit☆274Updated this week
- cell detection in calcium imaging recordings☆359Updated 5 months ago
- A Python API for working with Neurodata stored in the NWB Format☆177Updated this week
- Tools for processing 2P recordings☆122Updated last year
- a visualization method for neural data☆195Updated last month
- Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology fil…☆325Updated last week
- phy: interactive visualization and manual spike sorting of large-scale ephys data☆321Updated 3 months ago
- Neuronal Morphology Analysis Tool☆104Updated last month
- Automated 3D cell detection in very large images☆181Updated last week
- A lightweight python module to interact with atlases for systems neuroscience☆127Updated this week
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆123Updated 3 weeks ago
- SpikeGLX recording system GUI [Neuropixels NI]☆83Updated this week
- PYthon Neural Analysis Package☆281Updated this week
- GPU code for spike sorting☆179Updated 9 months ago
- Data format specification schema for the NWB neurophysiology data format☆53Updated this week
- Tools to work with Allen Inst CCF data in matlab☆124Updated 8 months ago
- Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…☆639Updated this week
- Electrophys Feature Extraction Library☆68Updated this week
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆140Updated 3 months ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆61Updated 3 weeks ago
- Fast spike sorting with drift correction☆480Updated last week
- Automated 3D brain registration with support for multiple species and atlases.☆123Updated last week
- Elephant is the Electrophysiology Analysis Toolkit☆201Updated 2 weeks ago
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆109Updated 3 months ago
- Registration of cells across sessions.☆70Updated 3 months ago
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆157Updated 2 weeks ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆61Updated 11 months ago
- Parameterizing neural power spectra into periodic & aperiodic components.☆363Updated last month
- CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…☆96Updated 3 weeks ago
- A Python package to facilitate the development, parallel simulation, optimization and analysis of multiscale biological neuronal networks…☆149Updated last week