AllenInstitute / AllenSDKLinks
code for reading and processing Allen Institute for Brain Science data
☆374Updated 2 years ago
Alternatives and similar repositories for AllenSDK
Users that are interested in AllenSDK are comparing it to the libraries listed below
Sorting:
- A Python API for working with Neurodata stored in the NWB Format☆207Updated this week
- Brain Modeling Toolkit☆316Updated 2 weeks ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆158Updated 3 weeks ago
- a visualization method for neural data☆241Updated 10 months ago
- cell detection in calcium imaging recordings☆427Updated 5 months ago
- Tools for processing 2P recordings☆131Updated 2 years ago
- Data format specification schema for the NWB neurophysiology data format☆61Updated 2 weeks ago
- Tools to work with Allen Inst CCF data in matlab☆145Updated 6 months ago
- Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology fil…☆355Updated last week
- phy: interactive visualization and manual spike sorting of large-scale ephys data☆394Updated 2 months ago
- A Python interface to access neuroanatomical atlases☆172Updated this week
- Registration of cells across sessions.☆76Updated last year
- SpikeGLX recording system GUI [Neuropixels NI]☆101Updated this week
- Elephant is the Electrophysiology Analysis Toolkit☆230Updated last week
- Neuronal Morphology Analysis Tool☆108Updated 11 months ago
- OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁…☆75Updated 6 months ago
- Histology processing☆72Updated last month
- Code accompanying Steinmetz et al., 2019☆60Updated 4 years ago
- Deconvolution of calcium imaging data☆105Updated last year
- CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…☆111Updated 4 months ago
- Gallery of visualizations and analyses of the Allen Brain Observatory☆25Updated 3 years ago
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.☆71Updated last week
- GPU code for spike sorting☆189Updated last year
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- Browser-based NWB visualization and DANDI exploration☆62Updated last week
- ☆52Updated last year
- Automated 3D cell detection in very large images☆223Updated last week
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆185Updated 2 weeks ago
- miniscope analysis pipeline with interactive visualizations☆98Updated last year
- IaC codebase for the NeuroCAAS Platform☆39Updated 2 years ago