AllenInstitute / AllenSDKLinks
code for reading and processing Allen Institute for Brain Science data
☆358Updated last year
Alternatives and similar repositories for AllenSDK
Users that are interested in AllenSDK are comparing it to the libraries listed below
Sorting:
- cell detection in calcium imaging recordings☆387Updated 3 weeks ago
- Brain Modeling Toolkit☆288Updated 2 weeks ago
- A Python API for working with Neurodata stored in the NWB Format☆194Updated this week
- a visualization method for neural data☆225Updated 2 months ago
- phy: interactive visualization and manual spike sorting of large-scale ephys data☆358Updated 10 months ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆144Updated this week
- Tools for processing 2P recordings☆125Updated last year
- Neuronal Morphology Analysis Tool☆106Updated 3 months ago
- Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology fil…☆339Updated this week
- Data format specification schema for the NWB neurophysiology data format☆57Updated last week
- GPU code for spike sorting☆184Updated last year
- A Python interface to access neuroanatomical atlases☆150Updated this week
- Electrophys Feature Extraction Library☆71Updated 3 months ago
- Fast spike sorting with drift correction☆525Updated this week
- NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…☆124Updated 4 months ago
- Tools to work with Allen Inst CCF data in matlab☆134Updated last year
- Elephant is the Electrophysiology Analysis Toolkit☆212Updated 2 months ago
- PYthon Neural Analysis Package☆315Updated this week
- OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁…☆66Updated last month
- Automated 3D cell detection in very large images☆216Updated this week
- Registration of cells across sessions.☆75Updated 9 months ago
- Deconvolution of calcium imaging data☆95Updated 4 months ago
- SpikeGLX recording system GUI [Neuropixels NI]☆90Updated last week
- Archived code for reading data saved by the Open Ephys GUI☆61Updated 2 years ago
- A Python-based module for creating flexible and robust spike sorting pipelines.☆598Updated last week
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆115Updated 9 months ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆74Updated last month
- Algorithm for automated source extraction from 1P data☆20Updated last year
- A curated list of awesome Neuropixels resources.☆104Updated 3 months ago