AllenInstitute / AllenSDKLinks
code for reading and processing Allen Institute for Brain Science data
☆371Updated last year
Alternatives and similar repositories for AllenSDK
Users that are interested in AllenSDK are comparing it to the libraries listed below
Sorting:
- Brain Modeling Toolkit☆306Updated last week
- cell detection in calcium imaging recordings☆414Updated 2 months ago
- A Python API for working with Neurodata stored in the NWB Format☆203Updated this week
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆156Updated last month
- Neuronal Morphology Analysis Tool☆108Updated 8 months ago
- a visualization method for neural data☆238Updated 7 months ago
- Tools for processing 2P recordings☆130Updated 2 years ago
- Tools to work with Allen Inst CCF data in matlab☆142Updated 4 months ago
- Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology fil…☆350Updated last week
- A Python interface to access neuroanatomical atlases☆165Updated last week
- Data format specification schema for the NWB neurophysiology data format☆60Updated last month
- Registration of cells across sessions.☆75Updated last year
- phy: interactive visualization and manual spike sorting of large-scale ephys data☆381Updated 3 weeks ago
- Elephant is the Electrophysiology Analysis Toolkit☆223Updated this week
- OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁…☆73Updated 4 months ago
- SpikeGLX recording system GUI [Neuropixels NI]☆98Updated this week
- Code accompanying Steinmetz et al., 2019☆60Updated 4 years ago
- Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…☆699Updated this week
- Deconvolution of calcium imaging data☆101Updated 9 months ago
- Histology processing☆71Updated 2 months ago
- Automated 3D cell detection in very large images☆219Updated last week
- ☆52Updated last year
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated last year
- Tools for working with single-neuron morphological reconstructions☆22Updated last year
- Gallery of visualizations and analyses of the Allen Brain Observatory☆25Updated 3 years ago
- Collaboration between BBP and AIBS☆58Updated last year
- Browser-based NWB visualization and DANDI exploration☆60Updated this week
- miniscope analysis pipeline with interactive visualizations☆96Updated last year
- Calcium Data Extraction and Analysis☆47Updated 2 years ago
- CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…☆110Updated last month