AllenInstitute / AllenSDKLinks
code for reading and processing Allen Institute for Brain Science data
☆374Updated 2 years ago
Alternatives and similar repositories for AllenSDK
Users that are interested in AllenSDK are comparing it to the libraries listed below
Sorting:
- A Python API for working with Neurodata stored in the NWB Format☆207Updated last week
- Brain Modeling Toolkit☆316Updated last week
- Neuronal Morphology Analysis Tool☆108Updated 11 months ago
- cell detection in calcium imaging recordings☆427Updated 5 months ago
- Data format specification schema for the NWB neurophysiology data format☆61Updated last week
- a visualization method for neural data☆241Updated 10 months ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆158Updated 3 weeks ago
- Elephant is the Electrophysiology Analysis Toolkit☆230Updated last week
- Tools for processing 2P recordings☆131Updated 2 years ago
- SpikeGLX recording system GUI [Neuropixels NI]☆101Updated this week
- phy: interactive visualization and manual spike sorting of large-scale ephys data☆394Updated 2 months ago
- Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology fil…☆355Updated last week
- A Python interface to access neuroanatomical atlases☆172Updated this week
- Tools to work with Allen Inst CCF data in matlab☆145Updated 6 months ago
- Collaboration between BBP and AIBS☆59Updated 2 months ago
- Deconvolution of calcium imaging data☆105Updated last year
- Registration of cells across sessions.☆76Updated last year
- Code accompanying Steinmetz et al., 2019☆60Updated 4 years ago
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆185Updated last week
- OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁…☆75Updated 6 months ago
- Gallery of visualizations and analyses of the Allen Brain Observatory☆25Updated 3 years ago
- PYthon Neural Analysis Package☆348Updated this week
- Browser-based NWB visualization and DANDI exploration☆62Updated this week
- NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…☆140Updated 3 weeks ago
- GPU code for spike sorting☆189Updated last year
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆151Updated last year
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆123Updated last year
- IaC codebase for the NeuroCAAS Platform☆39Updated 2 years ago
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.☆71Updated this week
- CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…☆111Updated 3 months ago