Alternatives and similar repositories for AllenSDK:

Users that are interested in AllenSDK are comparing it to the libraries listed below

• MouseLand / suite2p
  cell detection in calcium imaging recordings
  ☆378Updated last month
• NeurodataWithoutBorders / pynwb
  A Python API for working with Neurodata stored in the NWB Format
  ☆194Updated this week
• AllenInstitute / bmtk
  Brain Modeling Toolkit
  ☆289Updated last week
• brainglobe / brainglobe-atlasapi
  A Python interface to access neuroanatomical atlases
  ☆147Updated this week
• brainglobe / cellfinder
  Automated 3D cell detection in very large images
  ☆217Updated this week
• MouseLand / rastermap
  a visualization method for neural data
  ☆222Updated last month
• cortex-lab / allenCCF
  Tools to work with Allen Inst CCF data in matlab
  ☆134Updated last year
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆140Updated last week
• cortex-lab / Suite2P
  Tools for processing 2P recordings
  ☆125Updated last year
• NeuralEnsemble / python-neo
  Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology fil…
  ☆337Updated this week
• cortex-lab / phy
  phy: interactive visualization and manual spike sorting of large-scale ephys data
  ☆351Updated 9 months ago
• NeuralEnsemble / elephant
  Elephant is the Electrophysiology Analysis Toolkit
  ☆210Updated last month
• MouseLand / Kilosort
  Fast spike sorting with drift correction
  ☆525Updated this week
• BlueBrain / NeuroM
  Neuronal Morphology Analysis Tool
  ☆105Updated 2 months ago
• BlueBrain / eFEL
  Electrophys Feature Extraction Library
  ☆71Updated 2 months ago
• billkarsh / SpikeGLX
  SpikeGLX recording system GUI [Neuropixels NI]
  ☆87Updated 3 weeks ago
• cortex-lab / KiloSort
  GPU code for spike sorting
  ☆182Updated last year
• j-friedrich / OASIS
  Deconvolution of calcium imaging data
  ☆93Updated 3 months ago
• zivlab / CellReg
  Registration of cells across sessions.
  ☆75Updated 8 months ago
• AllenInstitute / ecephys_spike_sorting
  Modules for processing extracellular electrophysiology data from Neuropixels probes
  ☆114Updated 8 months ago
• NeurodataWithoutBorders / nwb-schema
  Data format specification schema for the NWB neurophysiology data format
  ☆57Updated last week
• pynapple-org / pynapple
  PYthon Neural Analysis Package
  ☆309Updated last week
• flatironinstitute / CaImAn
  Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…
  ☆660Updated this week
• brainglobe / brainreg
  Automated 3D brain registration with support for multiple species and atlases.
  ☆134Updated this week
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆60Updated last year
• petersaj / neuropixels_trajectory_explorer
  Neuropixels trajectory explorer with the Allen CCF mouse atlas
  ☆73Updated 3 weeks ago
• AllenInstitute / openscope_databook
  OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁…
  ☆66Updated 3 weeks ago
• MouseLand / facemap
  Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…
  ☆165Updated last month
• m-beau / NeuroPyxels
  NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…
  ☆121Updated 3 months ago
• LorenFrankLab / spyglass
  Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF
  ☆98Updated this week