Alternatives and similar repositories for AllenSDK

Users that are interested in AllenSDK are comparing it to the libraries listed below

• AllenInstitute / bmtk
  Brain Modeling Toolkit
  ☆293Updated 3 weeks ago
• NeurodataWithoutBorders / pynwb
  A Python API for working with Neurodata stored in the NWB Format
  ☆195Updated last week
• MouseLand / suite2p
  cell detection in calcium imaging recordings
  ☆396Updated last month
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆148Updated 2 months ago
• MouseLand / rastermap
  a visualization method for neural data
  ☆235Updated 4 months ago
• NeuralEnsemble / python-neo
  Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology fil…
  ☆345Updated last week
• BlueBrain / NeuroM
  Neuronal Morphology Analysis Tool
  ☆106Updated 5 months ago
• NeurodataWithoutBorders / nwb-schema
  Data format specification schema for the NWB neurophysiology data format
  ☆59Updated 3 weeks ago
• brainglobe / brainglobe-atlasapi
  A Python interface to access neuroanatomical atlases
  ☆156Updated last week
• cortex-lab / Suite2P
  Tools for processing 2P recordings
  ☆127Updated last year
• billkarsh / SpikeGLX
  SpikeGLX recording system GUI [Neuropixels NI]
  ☆93Updated 2 weeks ago
• cortex-lab / phy
  phy: interactive visualization and manual spike sorting of large-scale ephys data
  ☆367Updated last year
• j-friedrich / OASIS
  Deconvolution of calcium imaging data
  ☆96Updated 6 months ago
• NeuralEnsemble / elephant
  Elephant is the Electrophysiology Analysis Toolkit
  ☆219Updated 4 months ago
• cortex-lab / allenCCF
  Tools to work with Allen Inst CCF data in matlab
  ☆138Updated 3 weeks ago
• zhoupc / CNMF_E
  Constrained Nonnegative Matrix Factorization for microEndoscopic data
  ☆147Updated last year
• AllenInstitute / openscope_databook
  OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁…
  ☆71Updated 3 weeks ago
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆61Updated last year
• AllenInstitute / sonata
  Collaboration between BBP and AIBS
  ☆58Updated last year
• petersaj / AP_histology
  Histology processing
  ☆67Updated 3 weeks ago
• AllenInstitute / ecephys_spike_sorting
  Modules for processing extracellular electrophysiology data from Neuropixels probes
  ☆119Updated 11 months ago
• nsteinme / steinmetz-et-al-2019
  Code accompanying Steinmetz et al., 2019
  ☆60Updated 3 years ago
• zivlab / CellReg
  Registration of cells across sessions.
  ☆75Updated 11 months ago
• AllenInstitute / brain_observatory_examples
  Gallery of visualizations and analyses of the Allen Brain Observatory
  ☆25Updated 2 years ago
• AllenInstitute / neuron_morphology
  Tools for working with single-neuron morphological reconstructions
  ☆22Updated last year
• cortex-lab / KiloSort
  GPU code for spike sorting
  ☆186Updated last year
• BlueBrain / eFEL
  Electrophys Feature Extraction Library
  ☆72Updated 5 months ago
• petersenpeter / CellExplorer
  CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…
  ☆104Updated 7 months ago
• LernerLab / GuPPy
  Guided Photometry Analysis in Python, a free and open-source FP analysis tool.
  ☆76Updated 5 months ago
• brainglobe / cellfinder
  Automated 3D cell detection in very large images
  ☆216Updated this week