AllenInstitute / AllenSDK

Related projects: ⓘ

• AllenInstitute / bmtk
  Brain Modeling Toolkit
  ☆267Updated 3 weeks ago
• MouseLand / suite2p
  cell detection in calcium imaging recordings
  ☆346Updated 3 months ago
• NeurodataWithoutBorders / pynwb
  A Python API for working with Neurodata stored in the NWB Format
  ☆176Updated this week
• cortex-lab / phy
  phy: interactive visualization and manual spike sorting of large-scale ephys data
  ☆314Updated last month
• MouseLand / rastermap
  a visualization method for neural data
  ☆173Updated 2 months ago
• cortex-lab / Suite2P
  Tools for processing 2P recordings
  ☆121Updated 11 months ago
• MouseLand / Kilosort
  Fast spike sorting with drift correction for up to a thousand channels
  ☆456Updated this week
• NeuralEnsemble / elephant
  Elephant is the Electrophysiology Analysis Toolkit
  ☆195Updated last month
• BlueBrain / NeuroM
  Neuronal Morphology Analysis Tool
  ☆101Updated 3 months ago
• brainglobe / brainglobe-atlasapi
  A lightweight python module to interact with atlases for systems neuroscience
  ☆124Updated 2 weeks ago
• pynapple-org / pynapple
  PYthon Neural Analysis Package
  ☆257Updated this week
• NeuralEnsemble / python-neo
  Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology fil…
  ☆316Updated this week
• cortex-lab / KiloSort
  GPU code for spike sorting
  ☆175Updated 7 months ago
• cortex-lab / allenCCF
  Tools to work with Allen Inst CCF data in matlab
  ☆122Updated 6 months ago
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆115Updated 3 weeks ago
• flatironinstitute / CaImAn
  Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…
  ☆624Updated 2 weeks ago
• brainglobe / cellfinder
  Automated 3D cell detection in very large images
  ☆178Updated last week
• PhABC / neuroSummerSchools
  List of summer schools in neuroscience and related fields
  ☆215Updated 5 years ago
• AllenInstitute / ecephys_spike_sorting
  Modules for processing extracellular electrophysiology data from Neuropixels probes
  ☆106Updated last month
• billkarsh / SpikeGLX
  SpikeGLX recording system GUI [Neuropixels NI]
  ☆79Updated this week
• zhoupc / CNMF_E
  Constrained Nonnegative Matrix Factorization for microEndoscopic data
  ☆139Updated last month
• KordingLab / Neural_Decoding
  A python package that includes many methods for decoding neural activity
  ☆420Updated last year
• zivlab / CellReg
  Registration of cells across sessions.
  ☆67Updated last month
• Mark-Kramer / Case-Studies-Python
  An introduction to the practicing neuroscientist to data analysis in Python
  ☆146Updated last year
• BlohmLab / NSCI801-QuantNeuro
  NSCI 801 (Queen's U) Quantitative Neuroscience course materials
  ☆112Updated 2 years ago
• brainglobe / brainreg
  Automated 3D brain registration with support for multiple species and atlases.
  ☆119Updated 2 weeks ago
• SpikeInterface / spikeinterface
  A Python-based module for creating flexible and robust spike sorting pipelines.
  ☆495Updated this week
• nel-lab / mesmerize-core
  High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
  ☆59Updated last week
• flatironinstitute / CaImAn-MATLAB
  Complete Matlab pipeline for large scale calcium imaging data analysis
  ☆250Updated last year
• aestrivex / bctpy
  brain connectivity toolbox for python
  ☆288Updated last year