Alternatives and similar repositories for brainrender

Users that are interested in brainrender are comparing it to the libraries listed below

• brainglobe / cellfinder
  Automated 3D cell detection in very large images
  ☆216Updated this week
• brainglobe / brainglobe-atlasapi
  A Python interface to access neuroanatomical atlases
  ☆150Updated this week
• brainglobe / brainreg
  Automated 3D brain registration with support for multiple species and atlases.
  ☆134Updated this week
• MouseLand / suite2p
  cell detection in calcium imaging recordings
  ☆387Updated 3 weeks ago
• NeurodataWithoutBorders / pynwb
  A Python API for working with Neurodata stored in the NWB Format
  ☆194Updated this week
• MouseLand / rastermap
  a visualization method for neural data
  ☆225Updated 2 months ago
• AllenInstitute / AllenSDK
  code for reading and processing Allen Institute for Brain Science data
  ☆358Updated last year
• pynapple-org / pynapple
  PYthon Neural Analysis Package
  ☆315Updated this week
• NeuralEnsemble / python-neo
  Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology fil…
  ☆339Updated this week
• cortex-lab / phy
  phy: interactive visualization and manual spike sorting of large-scale ephys data
  ☆358Updated 10 months ago
• AllenInstitute / bmtk
  Brain Modeling Toolkit
  ☆288Updated last week
• MouseLand / Kilosort
  Fast spike sorting with drift correction
  ☆525Updated this week
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆144Updated this week
• Mark-Kramer / Case-Studies-Python
  An introduction to the practicing neuroscientist to data analysis in Python
  ☆159Updated 2 years ago
• fooof-tools / fooof
  Parameterizing neural power spectra into periodic & aperiodic components.
  ☆389Updated 2 weeks ago
• suny-downstate-medical-center / netpyne
  A Python package to facilitate the development, parallel simulation, optimization and analysis of multiscale biological neuronal networks…
  ☆158Updated 2 weeks ago
• cortex-lab / allenCCF
  Tools to work with Allen Inst CCF data in matlab
  ☆134Updated last year
• PolarBean / DeepSlice
  A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.
  ☆96Updated last month
• nel-lab / mesmerize-core
  High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
  ☆66Updated this week
• BlohmLab / NSCI801-QuantNeuro
  NSCI 801 (Queen's U) Quantitative Neuroscience course materials
  ☆111Updated 3 months ago
• netneurolab / neuromaps
  A toolbox for comparing brain maps
  ☆285Updated last month
• MouseLand / facemap
  Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…
  ☆166Updated 2 months ago
• NeuralEnsemble / elephant
  Elephant is the Electrophysiology Analysis Toolkit
  ☆212Updated 2 months ago
• petersenpeter / CellExplorer
  CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…
  ☆102Updated 5 months ago
• cortex-lab / KiloSort
  GPU code for spike sorting
  ☆184Updated last year
• bids-standard / bids-specification
  Brain Imaging Data Structure (BIDS) Specification
  ☆309Updated this week
• neurolib-dev / neurolib
  Easy whole-brain modeling for computational neuroscientists 🧠💻👩🏿‍🔬
  ☆432Updated 4 months ago
• AllenInstitute / openscope_databook
  OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁…
  ☆66Updated last month
• AllenInstitute / ecephys_spike_sorting
  Modules for processing extracellular electrophysiology data from Neuropixels probes
  ☆115Updated 9 months ago
• mne-tools / mne-bids
  MNE-BIDS is a Python package that allows you to read and write BIDS-compatible datasets with the help of MNE-Python.
  ☆148Updated this week