brainglobe / brainrenderLinks
A Python package to visualise neuroanatomical data in atlas space
☆610Updated this week
Alternatives and similar repositories for brainrender
Users that are interested in brainrender are comparing it to the libraries listed below
Sorting:
- Automated 3D cell detection in very large images☆219Updated 2 weeks ago
- A Python interface to access neuroanatomical atlases☆165Updated last week
- Automated 3D brain registration with support for multiple species and atlases.☆139Updated 2 weeks ago
- cell detection in calcium imaging recordings☆414Updated 2 months ago
- code for reading and processing Allen Institute for Brain Science data☆371Updated last year
- Brain Modeling Toolkit☆309Updated 2 weeks ago
- A Python API for working with Neurodata stored in the NWB Format☆203Updated last week
- a visualization method for neural data☆238Updated 7 months ago
- PYthon Neural Analysis Package☆337Updated last week
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆156Updated last month
- phy: interactive visualization and manual spike sorting of large-scale ephys data☆382Updated last month
- Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology fil…☆351Updated 2 weeks ago
- CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…☆110Updated last month
- Easy whole-brain modeling for computational neuroscientists 🧠💻👩🏿🔬☆457Updated last week
- Tools to work with Allen Inst CCF data in matlab☆142Updated 4 months ago
- Elephant is the Electrophysiology Analysis Toolkit☆226Updated last week
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆179Updated 3 months ago
- Python library for analysis of neuroanatomical data.☆107Updated last week
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆70Updated 2 months ago
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆107Updated 3 months ago
- Guided Photometry Analysis in Python, a free and open-source FP analysis tool.☆78Updated 2 weeks ago
- SpikeGLX recording system GUI [Neuropixels NI]☆98Updated last week
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆81Updated 11 months ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆54Updated 2 years ago
- Neuronal Morphology Analysis Tool☆108Updated 8 months ago
- Open-source stereotaxic coordinator☆15Updated 2 years ago
- Fast spike sorting with drift correction☆569Updated 2 weeks ago
- An introduction to the practicing neuroscientist to data analysis in Python☆162Updated 2 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated last year
- Rendering anatomical heatmaps with brainrender and matplotlib☆46Updated 2 weeks ago