brainglobe / brainrenderLinks
A Python package to visualise neuroanatomical data in atlas space
☆587Updated last week
Alternatives and similar repositories for brainrender
Users that are interested in brainrender are comparing it to the libraries listed below
Sorting:
- A Python interface to access neuroanatomical atlases☆155Updated this week
- Automated 3D cell detection in very large images☆216Updated last week
- Automated 3D brain registration with support for multiple species and atlases.☆134Updated last week
- cell detection in calcium imaging recordings☆395Updated last month
- code for reading and processing Allen Institute for Brain Science data☆363Updated last year
- A Python API for working with Neurodata stored in the NWB Format☆195Updated last week
- PYthon Neural Analysis Package☆318Updated last week
- a visualization method for neural data☆229Updated 3 months ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆147Updated last month
- Brain Modeling Toolkit☆289Updated last week
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆169Updated 3 months ago
- CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…☆103Updated 7 months ago
- Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology fil…☆346Updated last week
- phy: interactive visualization and manual spike sorting of large-scale ephys data☆365Updated 11 months ago
- Tools to work with Allen Inst CCF data in matlab☆135Updated last year
- Elephant is the Electrophysiology Analysis Toolkit☆216Updated 3 months ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆68Updated last month
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆98Updated 3 weeks ago
- Open-source stereotaxic coordinator☆15Updated 2 years ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆50Updated last year
- Histology processing☆66Updated last month
- SpikeGLX recording system GUI [Neuropixels NI]☆90Updated last week
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆29Updated last year
- Python library for analysis of neuroanatomical data.☆102Updated last month
- pyABF is a Python package for reading electrophysiology data from Axon Binary Format (ABF) files☆107Updated 9 months ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆43Updated last week
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆75Updated 7 months ago
- OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁…☆69Updated this week
- An introduction to the practicing neuroscientist to data analysis in Python☆160Updated 2 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆61Updated last year