Alternatives and similar repositories for brainrender

Users that are interested in brainrender are comparing it to the libraries listed below

• brainglobe / brainglobe-atlasapi
  A Python interface to access neuroanatomical atlases
  ☆158Updated last week
• brainglobe / cellfinder
  Automated 3D cell detection in very large images
  ☆218Updated 3 weeks ago
• brainglobe / brainreg
  Automated 3D brain registration with support for multiple species and atlases.
  ☆136Updated 3 weeks ago
• AllenInstitute / AllenSDK
  code for reading and processing Allen Institute for Brain Science data
  ☆369Updated last year
• NeurodataWithoutBorders / pynwb
  A Python API for working with Neurodata stored in the NWB Format
  ☆200Updated this week
• MouseLand / suite2p
  cell detection in calcium imaging recordings
  ☆404Updated 3 weeks ago
• NeuralEnsemble / python-neo
  Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology fil…
  ☆347Updated this week
• MouseLand / rastermap
  a visualization method for neural data
  ☆235Updated 5 months ago
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆151Updated this week
• pynapple-org / pynapple
  PYthon Neural Analysis Package
  ☆322Updated this week
• AllenInstitute / bmtk
  Brain Modeling Toolkit
  ☆300Updated 2 weeks ago
• cortex-lab / phy
  phy: interactive visualization and manual spike sorting of large-scale ephys data
  ☆374Updated last year
• simonarvin / braincoordinator
  Open-source stereotaxic coordinator
  ☆15Updated 2 years ago
• petersenpeter / CellExplorer
  CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…
  ☆108Updated 9 months ago
• MouseLand / facemap
  Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…
  ☆175Updated 2 months ago
• NeuralEnsemble / elephant
  Elephant is the Electrophysiology Analysis Toolkit
  ☆221Updated 5 months ago
• nel-lab / mesmerize-core
  High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
  ☆69Updated 3 weeks ago
• PolarBean / DeepSlice
  A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.
  ☆105Updated last month
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆52Updated 2 years ago
• brainglobe / brainglobe-heatmap
  Rendering anatomical heatmaps with brainrender and matplotlib
  ☆44Updated this week
• schnitzer-lab / EXTRACT-public
  EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…
  ☆77Updated 9 months ago
• BlueBrain / NeuroM
  Neuronal Morphology Analysis Tool
  ☆108Updated 7 months ago
• cortex-lab / allenCCF
  Tools to work with Allen Inst CCF data in matlab
  ☆141Updated 2 months ago
• porteralab / EZcalcium
  Calcium Data Extraction and Analysis
  ☆45Updated 2 years ago
• Whitlock-Group / HERBS
  ☆52Updated last year
• swharden / pyABF
  pyABF is a Python package for reading electrophysiology data from Axon Binary Format (ABF) files
  ☆110Updated 11 months ago
• petersaj / AP_histology
  Histology processing
  ☆70Updated 2 weeks ago
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆62Updated last year
• lahammond / BrainJ
  Fiji pipeline for automated serial section reconstruction and mouse brain analysis.
  ☆29Updated last year
• navis-org / navis
  Python library for analysis of neuroanatomical data.
  ☆105Updated last month