brainglobe / brainrenderLinks
A Python package to visualise neuroanatomical data in atlas space
☆622Updated this week
Alternatives and similar repositories for brainrender
Users that are interested in brainrender are comparing it to the libraries listed below
Sorting:
- A Python interface to access neuroanatomical atlases☆172Updated this week
- Automated 3D cell detection in very large images☆223Updated this week
- Automated 3D brain registration with support for multiple species and atlases.☆143Updated this week
- cell detection in calcium imaging recordings☆427Updated 5 months ago
- A Python API for working with Neurodata stored in the NWB Format☆207Updated last week
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆158Updated 3 weeks ago
- code for reading and processing Allen Institute for Brain Science data☆374Updated 2 years ago
- PYthon Neural Analysis Package☆348Updated this week
- a visualization method for neural data☆241Updated 10 months ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆70Updated last week
- CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…☆111Updated 3 months ago
- phy: interactive visualization and manual spike sorting of large-scale ephys data☆394Updated last month
- Brain Modeling Toolkit☆316Updated last week
- Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology fil…☆355Updated last week
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆113Updated 5 months ago
- SpikeGLX recording system GUI [Neuropixels NI]☆101Updated this week
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆185Updated last week
- Open-source stereotaxic coordinator☆15Updated 3 years ago
- Neuronal Morphology Analysis Tool☆108Updated 11 months ago
- Elephant is the Electrophysiology Analysis Toolkit☆230Updated this week
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆57Updated 2 years ago
- Tools to work with Allen Inst CCF data in matlab☆145Updated 6 months ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- ☆52Updated last year
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆83Updated last year
- miniscope analysis pipeline with interactive visualizations☆98Updated last year
- Python library for analysis of neuroanatomical data.☆107Updated last week
- Easy whole-brain modeling for computational neuroscientists 🧠💻👩🏿🔬☆463Updated 2 months ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆31Updated 2 years ago
- Histology processing☆72Updated last month