A Python package to visualise neuroanatomical data in atlas space
☆666Aug 10, 2026Updated this week
Alternatives and similar repositories for brainrender
Users that are interested in brainrender are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Automated 3D cell detection in very large images☆230Updated this week
- A Python interface to access neuroanatomical atlases☆183Updated this week
- Automated 3D brain registration with support for multiple species and atlases.☆149Updated this week
- Rendering anatomical heatmaps with brainrender and matplotlib☆52Updated this week
- Efficient cell detection in large images using cellfinder in napari☆22Jan 5, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Segmentation of anatomical structures in a common coordinate space☆36Updated this week
- A Python package to download neuronal morphologies☆17Aug 3, 2026Updated last week
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Nov 26, 2020Updated 5 years ago
- Registration to BrainGlobe atlases in napari using Elastix☆30Aug 4, 2026Updated last week
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆60Jun 29, 2026Updated last month
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆39Nov 24, 2023Updated 2 years ago
- Derotate images acquired via multiphoton calcium imaging☆17Aug 3, 2026Updated last week
- Anatomical space conventions made easy.☆12Updated this week
- Visualise brainreg registration output☆10Nov 20, 2021Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- brainglobe.info website☆14Updated this week
- Lightweight data specification for systems neuroscience, inspired by BIDS.☆23Jul 14, 2026Updated 3 weeks ago
- Tools to work with Allen Inst CCF data in matlab☆152Jul 15, 2025Updated last year
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆127Jun 8, 2026Updated 2 months ago
- Build unbiased anatomical templates from individual images☆13Updated this week
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆24Updated this week
- Facemap: Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also incl…☆199Jan 26, 2026Updated 6 months ago
- Standalone cellfinder cell detection algorithm☆20Jan 3, 2024Updated 2 years ago
- Automated 3D brain registration in napari with support for multiple species and atlases.☆16Jan 5, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Automated and reproducible analysis of multiphoton imaging datasets☆22Updated this week
- R package for segmentation, registration and generating web-based brain atlases from microscope images☆92Jul 16, 2021Updated 5 years ago
- Read and write files from the BrainGlobe neuroanatomy suite☆15Updated this week
- ☆46Jun 18, 2026Updated last month
- IBL core shared libraries☆68Aug 4, 2026Updated last week
- PYthon Neural Analysis Package☆376Jul 31, 2026Updated last week
- Variational Animal Motion Embedding - A tool for time series embedding and clustering☆201Oct 3, 2024Updated last year
- cell detection in calcium imaging recordings☆467Jul 1, 2026Updated last month
- Pose estimation scripts to be run on the SWC HPC cluster☆12Dec 5, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- SimBA (Simple Behavioral Analysis), a pipeline and GUI for developing supervised behavioral classifiers☆367Updated this week
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆168May 29, 2026Updated 2 months ago
- Loading and saving of image data.☆10Feb 9, 2024Updated 2 years ago
- A Python API for working with Neurodata stored in the NWB Format☆222Aug 3, 2026Updated last week
- ☆11Oct 21, 2025Updated 9 months ago
- A package to manage electrophysiology analysis.☆23Aug 3, 2026Updated last week
- Histology processing☆80Jul 31, 2026Updated last week