A Python package to visualise neuroanatomical data in atlas space
☆682Oct 13, 2026Updated 2 weeks ago
Alternatives and similar repositories for brainrender
Users that are interested in brainrender are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Automated 3D cell detection in very large images☆232Oct 23, 2026Updated last week
- A Python interface to access neuroanatomical atlases☆190Updated this week
- Automated 3D brain registration with support for multiple species and atlases.☆151Oct 20, 2026Updated last week
- Rendering anatomical heatmaps with brainrender and matplotlib☆53Oct 20, 2026Updated last week
- Efficient cell detection in large images using cellfinder in napari☆23Jan 5, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A Python package to download neuronal morphologies☆18Oct 13, 2026Updated 2 weeks ago
- Registration to BrainGlobe atlases in napari using Elastix☆34Oct 13, 2026Updated 2 weeks ago
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆13Nov 26, 2020Updated 5 years ago
- Segmentation of anatomical structures in a common coordinate space☆38Oct 13, 2026Updated 2 weeks ago
- ☆10Dec 7, 2023Updated 2 years ago
- Shared general purpose tools for the BrainGlobe project☆13Updated this week
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆134Sep 8, 2026Updated last month
- Helps plan where to put things in brains☆11Nov 1, 2023Updated 2 years ago
- Anatomical space conventions made easy.☆13Oct 13, 2026Updated 2 weeks ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Tools to work with Allen Inst CCF data in matlab☆155Jul 15, 2025Updated last year
- Workflows that utilise BrainGlobe tools to perform data analysis and visualisation.☆13Oct 16, 2026Updated 2 weeks ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆40Nov 24, 2023Updated 2 years ago
- Facemap: Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also incl…☆204Jan 26, 2026Updated 9 months ago
- Automated 3D brain registration in napari with support for multiple species and atlases.☆17Jan 5, 2024Updated 2 years ago
- A tool for translating between common coordinate frameworks using deformation matrices.☆17Oct 15, 2026Updated 2 weeks ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆61Oct 18, 2026Updated last week
- Derotate images acquired via multiphoton calcium imaging☆17Oct 16, 2026Updated 2 weeks ago
- cell detection in calcium imaging recordings☆475Sep 12, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Visualise brainreg registration output☆11Nov 20, 2021Updated 4 years ago
- Tools for packaging atlases for use with BrainGlobe☆13Feb 21, 2024Updated 2 years ago
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆24Oct 13, 2026Updated 2 weeks ago
- Build unbiased anatomical templates from individual images☆14Oct 13, 2026Updated 2 weeks ago
- ☆11Sep 16, 2024Updated 2 years ago
- Automated and reproducible analysis of multiphoton imaging datasets☆26Updated this week
- PYthon Neural Analysis Package☆382Oct 24, 2026Updated last week
- Lightweight data specification for systems neuroscience, inspired by BIDS.☆27Jul 14, 2026Updated 3 months ago
- Visualisation and exploration of brain atlases☆10Aug 21, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Histology processing☆81Sep 23, 2026Updated last month
- brainglobe.info website☆14Oct 19, 2026Updated last week
- A Python toolbox for analysing animal body movements across space and time☆344Updated this week
- Loading and saving of image data.☆11Feb 9, 2024Updated 2 years ago
- R package for segmentation, registration and generating web-based brain atlases from microscope images☆93Jul 16, 2021Updated 5 years ago
- Standalone cellfinder cell detection algorithm☆20Jan 3, 2024Updated 2 years ago
- A Python API for working with Neurodata stored in the NWB Format☆225Oct 20, 2026Updated last week