brainglobe / brainrender
A Python package to visualise neuroanatomical data in atlas space
☆560Updated 2 weeks ago
Alternatives and similar repositories for brainrender:
Users that are interested in brainrender are comparing it to the libraries listed below
- Automated 3D cell detection in very large images☆182Updated this week
- A Python interface to access neuroanatomical atlases☆129Updated this week
- Automated 3D brain registration with support for multiple species and atlases.☆130Updated 2 weeks ago
- cell detection in calcium imaging recordings☆370Updated last month
- PYthon Neural Analysis Package☆299Updated last week
- code for reading and processing Allen Institute for Brain Science data☆352Updated last year
- a visualization method for neural data☆205Updated 4 months ago
- Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology fil…☆332Updated last week
- A Python API for working with Neurodata stored in the NWB Format☆186Updated this week
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆64Updated 3 months ago
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆90Updated 3 months ago
- Fast spike sorting with drift correction☆501Updated 3 weeks ago
- Elephant is the Electrophysiology Analysis Toolkit☆205Updated last week
- phy: interactive visualization and manual spike sorting of large-scale ephys data☆335Updated 6 months ago
- Multi-probe trajectory planning in an intuitive 3D environment☆52Updated last week
- Tools to work with Allen Inst CCF data in matlab☆127Updated 11 months ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆129Updated last week
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆164Updated 2 months ago
- SpikeGLX recording system GUI [Neuropixels NI]☆84Updated this week
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year
- An introduction to the practicing neuroscientist to data analysis in Python☆154Updated last year
- Open-source stereotaxic coordinator☆15Updated 2 years ago
- Brain Modeling Toolkit☆282Updated this week
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆119Updated last week
- NEural MOdelS, a statistical modeling framework for neuroscience.☆89Updated this week
- OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁…☆63Updated last month
- A Python-based module for creating flexible and robust spike sorting pipelines.☆561Updated this week
- miniscope analysis pipeline with interactive visualizations☆93Updated 7 months ago
- ☆52Updated 5 months ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆73Updated 5 months ago