Alternatives and similar repositories for loco-pipe

Users that are interested in loco-pipe are comparing it to the libraries listed below

• heche-psb / wgd
  wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication
  ☆37Updated 9 months ago
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆34Updated 3 years ago
• FerRacimo / GRoSS
  Graph-aware Retrieval of Selective Sweeps
  ☆22Updated last year
• mmatschiner / F4
  Assessing confidence in introgression among four populations
  ☆27Updated 4 years ago
• A-J-F-Mackintosh / syngraph
  Toolkit for evolutionary analyses of linkage groups
  ☆32Updated last year
• esrud / GONE
  GONE: Scripts, programs and an example data set
  ☆47Updated 4 months ago
• carolindahms / TreeMix
  Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…
  ☆39Updated last year
• bcgsc / ntSynt-viz
  Multi-genome synteny block visualization tool
  ☆47Updated last month
• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆49Updated 5 months ago
• harvardinformatics / degenotate
  ☆53Updated 5 months ago
• Rosemeis / pcangsd
  Framework for analyzing low depth NGS data in heterogeneous populations using PCA.
  ☆55Updated 4 months ago
• alachins / raisd
  RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors
  ☆36Updated 2 years ago
• ellenbell / FasTE
  A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…
  ☆27Updated 2 years ago
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆40Updated 2 years ago
• ThibaultLeroyFr / Intro2PopGenomics
  Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts
  ☆21Updated 6 years ago
• miriammiyagi / QuIBL
  Quantifying Introgression via Branch Lengths
  ☆55Updated 3 years ago
• joepickrell / pophistory-tutorial
  Tutorial on using popular tools for learning about population history
  ☆52Updated 7 years ago
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆48Updated this week
• celphin / RepeatOBserverV1
  An R package to visualize chromosome scale repeat patterns and predict centromere locations.
  ☆41Updated 2 weeks ago
• schmeing / gapless
  Gapless provides combined scaffolding, gap-closing and assembly correction with long reads
  ☆38Updated 2 years ago
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆37Updated 3 years ago
• iganna / pannagram
  ☆31Updated this week
• piosierra / pantera
  Identification of transposable element families from pangenome polymorphisms
  ☆53Updated 5 months ago
• paula-tataru / polyDFE
  predicting DFE and alpha from polymorphism data
  ☆27Updated 7 years ago
• ChongLab / Inspector
  A tool for evaluate long-read de novo assembly results
  ☆48Updated last year
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆25Updated 4 years ago
• tsackton / linked-selection
  ☆24Updated 8 years ago
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆75Updated 4 years ago
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆44Updated 6 years ago
• Yandell-Lab / maker
  Genome Annotation Pipeline
  ☆39Updated last year