Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference genome.
☆150Jun 23, 2026Updated 2 months ago
Alternatives and similar repositories for assemblytics
Users that are interested in assemblytics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A genome browser designed for complex structural variants and long reads.☆306Aug 19, 2026Updated last week
- A program to call variants from genome alignment☆84Apr 29, 2025Updated last year
- Segmental Duplication Assembler (SDA).☆44May 7, 2023Updated 3 years ago
- An accurate and ultra-fast hybrid genome assembler☆88Apr 10, 2024Updated 2 years ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆576Feb 14, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Chromosome-level scaffolding using multiple references☆170Sep 8, 2024Updated last year
- k-mer based assembly evaluation☆354Jul 6, 2026Updated last month
- MUM&Co uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation☆76Jan 12, 2026Updated 7 months ago
- An easy way to run BioNano genomic analysis☆27Apr 9, 2021Updated 5 years ago
- ☆45May 8, 2024Updated 2 years ago
- Structural Variant Identification Method using Genome Assemblies☆147Sep 16, 2022Updated 3 years ago
- A software for discovery, genotyping and characterization of structural variants☆22Sep 11, 2024Updated last year
- Toolset for SV simulation, comparison and filtering☆425Dec 1, 2023Updated 2 years ago
- Synteny and Rearrangement Identifier☆485Jul 1, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Fast genome analysis from unassembled short reads☆325Apr 8, 2024Updated 2 years ago
- Structural variation caller using third generation sequencing☆676Jul 20, 2026Updated last month
- SplitThreader has moved into Ribbon!☆67Aug 28, 2024Updated 2 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆119Jun 6, 2021Updated 5 years ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆929Aug 12, 2026Updated 2 weeks ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆310Mar 18, 2024Updated 2 years ago
- Code for phasing SVs with SNPs☆54Mar 27, 2020Updated 6 years ago
- De-novo Assembly Structural Variant Caller☆13Sep 15, 2016Updated 9 years ago
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆358Jul 19, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆26Apr 13, 2020Updated 6 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆80Aug 30, 2016Updated 10 years ago
- Tools for the analysis of structural variation in genomes☆81Feb 23, 2026Updated 6 months ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆31Sep 19, 2022Updated 3 years ago
- ☆290Dec 29, 2025Updated 8 months ago
- A method for variant graph genotyping based on exact alignment of k-mers☆88Apr 1, 2019Updated 7 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆83Apr 30, 2021Updated 5 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 8 years ago
- A tool to circularize genome assemblies☆257Apr 6, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A fast approximate aligner for long DNA sequences☆290Oct 11, 2024Updated last year
- Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.☆187Jul 30, 2026Updated last month
- haplotypic duplication identification tool☆294Oct 30, 2025Updated 10 months ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆253Dec 16, 2025Updated 8 months ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173May 30, 2021Updated 5 years ago
- FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON…☆205Mar 4, 2022Updated 4 years ago