MariaNattestad / Ribbon
A genome browser designed for complex structural variants and long reads.
☆254Updated this week
Related projects: ⓘ
- An overview of all nanopack tools☆207Updated last year
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆257Updated 10 months ago
- Nanopore demultiplexing, QC and alignment pipeline☆169Updated 3 weeks ago
- Filtering and trimming of long read sequencing data☆184Updated last year
- Pilon is an automated genome assembly improvement and variant detection tool☆340Updated 2 years ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆187Updated 2 months ago
- Fast genome analysis from unassembled short reads☆249Updated 5 months ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆249Updated 2 months ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆257Updated 11 months ago
- PASA software☆172Updated 9 months ago
- Count bases in BAM/CRAM files☆298Updated 2 years ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆230Updated 3 months ago
- Annotation and Ranking of Structural Variation☆210Updated 2 weeks ago
- Structural variation and indel detection by local assembly☆230Updated 3 months ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆250Updated 8 months ago
- A tool for estimating repeat sizes☆176Updated 7 months ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆287Updated 6 months ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆199Updated 2 months ago
- quality filtering tool for long reads☆275Updated last year
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆226Updated last week
- A tool to circularize genome assemblies☆229Updated 5 months ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆357Updated 9 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆304Updated 3 months ago
- Plot structural variant signals from many BAMs and CRAMs☆512Updated 2 months ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆106Updated last year
- Bacterial ribosomal RNA predictor☆218Updated last year
- Classifier for metagenomic sequences☆246Updated 2 months ago
- Toolset for SV simulation, comparison and filtering☆350Updated 9 months ago
- VarDict☆187Updated 8 months ago
- Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data☆205Updated 4 years ago