Alternatives and similar repositories for Ribbon

Users that are interested in Ribbon are comparing it to the libraries listed below

• PacificBiosciences / pbbioconda
  PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.
  ☆284Updated 9 months ago
• PapenfussLab / gridss
  GRIDSS: the Genomic Rearrangement IDentification Software Suite
  ☆280Updated 6 months ago
• philres / ngmlr
  NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…
  ☆305Updated last year
• genome / bam-readcount
  Count bases in BAM/CRAM files
  ☆319Updated 3 years ago
• RealTimeGenomics / rtg-tools
  RTG Tools: Utilities for accurate VCF comparison and manipulation
  ☆328Updated 6 months ago
• wdecoster / nanopack
  An overview of all nanopack tools
  ☆273Updated 2 years ago
• ryanlayer / samplot
  Plot structural variant signals from many BAMs and CRAMs
  ☆555Updated last year
• lgmgeo / AnnotSV
  Annotation and Ranking of Structural Variation
  ☆270Updated last month
• ekg / alignment-and-variant-calling-tutorial
  basic walk-throughs for alignment and variant calling from NGS sequencing data
  ☆217Updated 10 months ago
• ACEnglish / truvari
  Structural variant toolkit for VCFs
  ☆390Updated this week
• brentp / smoove
  structural variant calling and genotyping with existing tools, but, smoothly.
  ☆260Updated last year
• Magdoll / cDNA_Cupcake
  Miscellaneous collection of Python and R scripts for processing Iso-Seq data
  ☆276Updated 2 years ago
• pcingola / SnpEff
  ☆295Updated last week
• PacificBiosciences / IsoSeq
  Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
  ☆227Updated 4 months ago
• Illumina / ExpansionHunter
  A tool for estimating repeat sizes
  ☆199Updated last year
• Dfam-consortium / RepeatMasker
  RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
  ☆283Updated 3 weeks ago
• timflutre / trimmomatic
  Read trimming tool for Illumina NGS data.
  ☆148Updated 10 years ago
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆243Updated 4 years ago
• PacificBiosciences / pbmm2
  A minimap2 frontend for PacBio native data formats
  ☆205Updated 2 weeks ago
• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆284Updated last year
• dkoboldt / varscan
  Variant calling and somatic mutation/CNV detection for next-generation sequencing data
  ☆165Updated 2 years ago
• broadinstitute / gatk-sv
  A structural variation pipeline for short-read sequencing
  ☆196Updated this week
• ga4gh / benchmarking-tools
  Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls
  ☆207Updated 4 years ago
• luntergroup / octopus
  Bayesian haplotype-based mutation calling
  ☆321Updated this week
• gpertea / gffcompare
  classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
  ☆253Updated 4 months ago
• AstraZeneca-NGS / VarDict
  VarDict
  ☆201Updated last year
• abyzovlab / CNVnator
  a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads
  ☆230Updated 3 years ago
• snakemake-workflows / dna-seq-gatk-variant-calling
  This Snakemake pipeline implements the GATK best-practices workflow
  ☆261Updated 2 years ago
• suhrig / arriba
  Fast and accurate gene fusion detection from RNA-Seq data
  ☆253Updated 2 months ago
• NBISweden / GAAS
  Genome Assembly and Annotation Service code
  ☆216Updated last year