AppliedBioinformatics / runBNGLinks
An easy way to run BioNano genomic analysis
☆27Updated 4 years ago
Alternatives and similar repositories for runBNG
Users that are interested in runBNG are comparing it to the libraries listed below
Sorting:
- Custom tools to 'facilitate' BioNano Genomics data analysis☆33Updated 6 years ago
- TGS scaffolding☆46Updated 3 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- Transposable element polymorphism identification☆33Updated 4 years ago
- ☆76Updated 5 years ago
- Structural variant caller☆54Updated 3 years ago
- ☆44Updated 8 years ago
- Python wrappers for programs that search for transposable elements☆19Updated 8 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- ☆80Updated 3 months ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- finshingTool☆54Updated 8 years ago
- Variant annotation and merging pipeline☆36Updated 3 weeks ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- SV genotyping with long reads☆39Updated last year
- A pipeline for isoseq☆23Updated 7 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- ☆30Updated 5 years ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Detection and genotyping of structural variants☆18Updated 2 months ago
- ☆48Updated last year
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- A battery of methylation tools for PacBio HiFi reads☆36Updated 3 weeks ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 5 months ago