Alternatives and similar repositories for runBNG

Users that are interested in runBNG are comparing it to the libraries listed below

• Nucleomics-VIB / bionano-tools
  Custom tools to 'facilitate' BioNano Genomics data analysis
  ☆34Updated 7 years ago
• shingocat / lrscaf
  TGS scaffolding
  ☆47Updated 4 years ago
• zeeev / smartie-sv
  calling SVs from Blasr contig level alignments
  ☆54Updated 7 years ago
• kakitone / finishingTool
  finshingTool
  ☆54Updated 9 years ago
• shilpagarg / DipAsm
  ☆78Updated 5 years ago
• josephryan / estimate_genome_size.pl
  Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish
  ☆57Updated 2 years ago
• MeHelmy / princess
  ☆83Updated 9 months ago
• mapleforest / HaploMerger2
  ☆45Updated 9 years ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• mahulchak / svmu
  A program to call variants from genome alignment
  ☆81Updated 7 months ago
• lh3 / dipcall
  Reference-based variant calling pipeline for a pair of phased haplotype assemblies
  ☆105Updated 4 years ago
• Nextomics / nextsv
  ☆36Updated last year
• mcfrith / tandem-genotypes
  ☆50Updated last year
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆47Updated 4 years ago
• tanghaibao / allhic
  Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
  ☆60Updated 11 months ago
• llecompte / SVJedi
  SV genotyping with long reads
  ☆40Updated 2 years ago
• jason-weirather / AlignQC
  Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…
  ☆49Updated 7 years ago
• Nextomics / pipeline-for-isoseq
  A pipeline for isoseq
  ☆23Updated 7 years ago
• tsackton / linked-selection
  ☆24Updated 8 years ago
• aubombarely / Organelle_PBA
  A software to assemble chloroplast and mitochodrial genomes using PacBio data
  ☆40Updated 5 years ago
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆58Updated 2 years ago
• shilpagarg / WHdenovo
  ☆46Updated 5 years ago
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆95Updated 8 months ago
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆47Updated 5 years ago
• HullUni-bioinformatics / TE-search-tools
  Python wrappers for programs that search for transposable elements
  ☆19Updated 9 years ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆59Updated 2 years ago
• hillerlab / GenomeAlignmentTools
  Tools for improving the sensitivity and specificity of genome alignments
  ☆58Updated last year
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆41Updated 5 months ago
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆69Updated last month
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆33Updated 2 years ago