Alternatives and similar repositories for runBNG

Users that are interested in runBNG are comparing it to the libraries listed below

• Nucleomics-VIB / bionano-tools
  Custom tools to 'facilitate' BioNano Genomics data analysis
  ☆34Updated 7 years ago
• kakitone / finishingTool
  finshingTool
  ☆54Updated 8 years ago
• josephryan / estimate_genome_size.pl
  Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish
  ☆57Updated 2 years ago
• shingocat / lrscaf
  TGS scaffolding
  ☆47Updated 4 years ago
• zeeev / smartie-sv
  calling SVs from Blasr contig level alignments
  ☆54Updated 7 years ago
• MeHelmy / princess
  ☆83Updated 8 months ago
• mapleforest / HaploMerger2
  ☆45Updated 8 years ago
• shilpagarg / DipAsm
  ☆78Updated 5 years ago
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆34Updated 3 years ago
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆33Updated 2 years ago
• mahulchak / svmu
  A program to call variants from genome alignment
  ☆81Updated 6 months ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• HullUni-bioinformatics / TE-search-tools
  Python wrappers for programs that search for transposable elements
  ☆19Updated 9 years ago
• mcfrith / tandem-genotypes
  ☆49Updated last year
• PacificBiosciences / jasmine
  Call select base modifications in PacBio HiFi reads
  ☆15Updated last week
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆47Updated 4 years ago
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆48Updated this week
• aubombarely / Organelle_PBA
  A software to assemble chloroplast and mitochodrial genomes using PacBio data
  ☆40Updated 5 years ago
• mrvollger / SDA
  Segmental Duplication Assembler (SDA).
  ☆44Updated 2 years ago
• kjenike / panagram
  ☆67Updated 2 weeks ago
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆93Updated 6 months ago
• llecompte / SVJedi
  SV genotyping with long reads
  ☆40Updated 2 years ago
• hillerlab / GenomeAlignmentTools
  Tools for improving the sensitivity and specificity of genome alignments
  ☆58Updated last year
• Nextomics / nextsv
  ☆36Updated last year
• lh3 / dipcall
  Reference-based variant calling pipeline for a pair of phased haplotype assemblies
  ☆104Updated 4 years ago
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆39Updated 3 months ago
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆47Updated 4 years ago
• HuffordLab / GenomeQC
  ☆33Updated 4 years ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆59Updated 2 years ago
• bergmanlab / TELR
  TELR is a fast non-reference transposable element detector from long read sequencing data.
  ☆35Updated 2 years ago