KlugerLab / t-SNE-HeatmapsLinks
Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq
☆48Updated 6 years ago
Alternatives and similar repositories for t-SNE-Heatmaps
Users that are interested in t-SNE-Heatmaps are comparing it to the libraries listed below
Sorting:
- Dimensionality reduction for single cell RNA-seq data☆36Updated 5 years ago
- Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets☆106Updated 2 years ago
- easy access to benchmark datasets☆50Updated 7 years ago
- Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave☆45Updated last year
- ☆21Updated 8 years ago
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆48Updated 6 years ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆40Updated last year
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆23Updated 6 years ago
- kallisto index tag extractor☆20Updated 6 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆32Updated 4 years ago
- Comparison of dimensionality reduction methods☆30Updated 5 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year
- post-clustering differential expression test☆36Updated 6 years ago
- Inference of switch-like differential expression along single-cell trajectories☆21Updated 7 years ago
- Single cell interactive plotting tools☆23Updated 5 years ago
- Descriptive probabilistic marker gene approach to single-cell pseudotime inference☆29Updated 5 years ago
- countsimQC - Compare characteristic features of count data sets☆29Updated 2 months ago
- ☆29Updated 2 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated 2 weeks ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆28Updated last year
- Code and manuscript files for Aaron and Karsten's deconvolution paper.☆16Updated 6 years ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 6 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Repository for the Epigenomics Tutorial hold at ISMB 2017 in Prague☆14Updated 5 years ago
- Normalization for single cell RNA-seq data☆48Updated 3 months ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 6 years ago
- consistent quantification of external RNA-seq data sets☆58Updated last year
- Multi-omics studies are available here☆52Updated 3 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- ☆20Updated 8 years ago