immunogenomics / singlecellmethods
Collection of useful methods for single cell analysis
☆14Updated 5 months ago
Alternatives and similar repositories for singlecellmethods:
Users that are interested in singlecellmethods are comparing it to the libraries listed below
- Flexible, probablistic metrics for quality control of scRNA-seq data☆19Updated 2 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- ☆29Updated last year
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆14Updated last year
- Calculation of distance metrics for matrices☆25Updated 5 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- ☆38Updated 4 years ago
- An analytics package for single cell data☆21Updated 2 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated 7 months ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆34Updated 3 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- ☆14Updated 5 years ago
- Single-cell analysis with non-negative matrix factorization☆42Updated 3 months ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 years ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Updated last year
- repo to explore spatial data in R/Bioconductor and Python☆12Updated 5 years ago
- Cluster Identity Predictor (R package implementation)☆19Updated 2 years ago
- An r package that works as a wrapper to homologene☆42Updated last year
- ☆20Updated 2 months ago
- Clone of the Bioconductor repository for the batchelor package.☆16Updated 6 months ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- Toolkit for Single-Cell Velocity☆54Updated 3 weeks ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Hierarchical classification of cells☆23Updated 5 months ago
- R package for specialised analysis of single cell data☆36Updated 2 years ago
- ☆12Updated 8 months ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆15Updated 3 years ago
- kallisto index tag extractor☆20Updated 5 years ago