immunogenomics / singlecellmethodsLinks
Collection of useful methods for single cell analysis
☆14Updated last year
Alternatives and similar repositories for singlecellmethods
Users that are interested in singlecellmethods are comparing it to the libraries listed below
Sorting:
- Human brain, >200,000 nuclei☆24Updated 4 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Updated 2 years ago
- An analytics package for single cell data☆22Updated 3 years ago
- Single-cell analysis with non-negative matrix factorization☆45Updated 4 months ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆40Updated 4 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Updated 5 years ago
- Calculation of distance metrics for matrices☆26Updated 6 years ago
- ☆43Updated 4 years ago
- An r package that works as a wrapper to homologene☆47Updated 2 years ago
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆15Updated 2 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- Normalize CITEseq Data☆66Updated last month
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- ☆55Updated 4 years ago
- ☆12Updated last year
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- This repository consists of scripts and workflows used for generating results, figures, and tables published in the article: Can Liu, And…☆15Updated 4 years ago
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆27Updated last month
- R package for specialised analysis of single cell data☆40Updated 3 years ago
- Single-cell Case Control Analysis☆52Updated this week
- ☆29Updated 2 years ago
- An R package designed to demultiplex cell hashing data☆31Updated 3 weeks ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 4 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆21Updated 5 years ago
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆42Updated 4 years ago
- An R package for visualising cell-cell interactions☆43Updated last year
- ConsensusTME Gene Sets and R Script☆39Updated last year
- Inferring gene co-expression networks from single cell gene expression data☆28Updated 3 years ago