lkmklsmn / insctLinks
scRNAseq integration with triplet neural networks
☆41Updated 2 years ago
Alternatives and similar repositories for insct
Users that are interested in insct are comparing it to the libraries listed below
Sorting:
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 5 years ago
- Multi-omics studies are available here☆52Updated 3 years ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- benchmark for single-cell RNA-seq imputation methods☆26Updated last year
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 5 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆38Updated 3 years ago
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- Fast motif matching in R☆46Updated last year
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆33Updated 3 weeks ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48Updated 5 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆56Updated last year
- ☆29Updated 2 years ago
- RNA velocity validation☆22Updated 3 years ago
- Pathway-Level Information Extractor (PLIER): a generative model for gene expression data☆54Updated 11 months ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- Single-cell Scalable Visualization and Analytics☆26Updated 6 years ago
- Algorithms for single-cell analysis☆29Updated 4 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- ☆22Updated 5 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated 2 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- CiteFuse:☆28Updated 2 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated 2 months ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆50Updated last year
- ☆28Updated 6 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago