slowkow / cellguideLinks
🧭 Navigate single-cell RNA-seq datasets in your web browser.
☆29Updated 2 years ago
Alternatives and similar repositories for cellguide
Users that are interested in cellguide are comparing it to the libraries listed below
Sorting:
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Explore the cancer relevance of your gene list☆51Updated 5 months ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- kallisto index tag extractor☆20Updated 6 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated last year
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆27Updated 4 months ago
- Differential ATAC-seq toolkit☆27Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Updated 3 years ago
- Create QC and summary reports for Alevin output☆31Updated 2 weeks ago
- Code for EpiMap data browser☆14Updated last year
- Trans-association between HLA and TCR-CDR3☆18Updated 2 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- iread☆25Updated 4 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- scover☆23Updated last year
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆20Updated 5 months ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- SCASA: Single cell transcript quantification tool☆21Updated last year
- GEO RNA-seq Experiments Processing Pipeline☆21Updated 5 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 6 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated 2 months ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆25Updated last year
- ☆14Updated 6 years ago
- A simple, intuitive and Efficient single cell binary Data Storage format☆15Updated 5 years ago
- Inferring gene co-expression networks from single cell gene expression data☆26Updated 3 years ago
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated 7 months ago
- 🐶 hlabud: HLA genotype analysis in R☆16Updated 3 months ago