🧭 Navigate single-cell RNA-seq datasets in your web browser.
☆30Jul 13, 2023Updated 2 years ago
Alternatives and similar repositories for cellguide
Users that are interested in cellguide are comparing it to the libraries listed below
Sorting:
- ☆12Dec 1, 2021Updated 4 years ago
- Visualize cancer genomes with FAIR single-cell RNA-seq data☆12Jan 5, 2023Updated 3 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- ☆14Feb 19, 2026Updated last week
- ☆15Jun 3, 2019Updated 6 years ago
- Modular & interactive analysis components for bioinformatics☆18Dec 9, 2025Updated 2 months ago
- Allele frequency filter app☆14May 4, 2022Updated 3 years ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆42Jan 9, 2026Updated last month
- Lint Nextflow pipelines in Python.☆11Jan 23, 2025Updated last year
- Multi-sample Unified Discriminant ANalysis☆75Apr 11, 2023Updated 2 years ago
- R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data☆22Oct 8, 2025Updated 4 months ago
- a lexicographically-based GTF/GFF sorter☆38Apr 27, 2025Updated 10 months ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Feb 17, 2022Updated 4 years ago
- Analysis pipeline for the identification of viral integration events in genomes using a chimeric read approach.☆17Jun 3, 2025Updated 8 months ago
- Cell type matching in single-cell RNA-sequencing data using FR-Match☆19Feb 16, 2026Updated last week
- Single-cell Lung Cancer Atlas with 1.2M cells☆87Jan 19, 2025Updated last year
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆93Dec 18, 2024Updated last year
- Fast interval intersection library☆44Aug 20, 2025Updated 6 months ago
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Apr 25, 2023Updated 2 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 4 years ago
- GESTALT processing pipeline for barcodes captured with single-cell RNA sequencing☆13Jan 26, 2020Updated 6 years ago
- ☆11Updated this week
- Two or three subtypes of high grade serous ovarian cancer subtypes fit data from different populations better than four☆12Oct 10, 2018Updated 7 years ago
- Build and maintain multiple custom conda environments all in one place.☆40Dec 3, 2024Updated last year
- scRNAseq integration with triplet neural networks☆41Feb 2, 2026Updated 3 weeks ago
- analysis of single cell RNA sequencing data and cell type annotation☆19Jan 2, 2020Updated 6 years ago
- R package containing the Cerebro application.☆40Nov 21, 2021Updated 4 years ago
- Add functional variant annotation to MAF file☆11Nov 20, 2024Updated last year
- Lesson for the shell for genomics☆10Jan 12, 2021Updated 5 years ago
- reorganize paper of deconvolution method☆11Dec 14, 2023Updated 2 years ago
- NGS perl modules☆11Feb 16, 2026Updated last week
- Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.☆10Jan 27, 2026Updated last month
- Interactive tool for Phosphoproteomics☆13May 6, 2020Updated 5 years ago
- home of the bear's lair☆10May 19, 2017Updated 8 years ago
- Pipeline for generating RNAseq-based cancer patient reports☆11Updated this week
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated last year
- CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology☆68Jul 8, 2023Updated 2 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Feb 8, 2023Updated 3 years ago
- A Rust library and command line tool for working with genomic ranges and their data.☆100May 29, 2024Updated last year