slowkow / cellguide
🧠Navigate single-cell RNA-seq datasets in your web browser.
☆27Updated last year
Related projects ⓘ
Alternatives and complementary repositories for cellguide
- Differential ATAC-seq toolkit☆27Updated 11 months ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆24Updated 3 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- Single cell interactive plotting tools☆23Updated 4 years ago
- processes GoT amplicon data and generates a table of metrics☆26Updated 2 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated 7 months ago
- Explore the cancer relevance of your gene list☆49Updated 2 months ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Updated 3 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆24Updated 8 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 3 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 7 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 3 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 3 months ago
- scover☆22Updated last year
- deepStats: a stastitical toolbox for deeptools and genomic signals☆32Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆41Updated 2 years ago
- Toolbox package for organizing and working with TCGA data☆23Updated 3 weeks ago
- Create QC and summary reports for Alevin output☆31Updated 2 weeks ago
- Workshop for CNV analysis with Bioconductor☆17Updated 3 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 4 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 6 years ago
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆10Updated 2 years ago
- Bead-based single-cell atac processing☆31Updated 3 years ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆27Updated 4 years ago
- Analysis for svaseq paper☆19Updated 10 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- kallisto index tag extractor☆20Updated 5 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 3 months ago
- A python tool to do comparative analysis of mulitple single cell datasets.☆21Updated 5 years ago