Alternatives and similar repositories for t-cell-guide

Users that are interested in t-cell-guide are comparing it to the libraries listed below

• czi-hca-comp-tools / easy-data
  easy access to benchmark datasets
  ☆50Updated 7 years ago
• Teichlab / GPfates
  ☆21Updated 8 years ago
• pachterlab / sircel
  Identify cell barcodes from single-cell genomics sequencing experiments
  ☆43Updated 4 years ago
• JEFworks / ubit2
  User-friendly Bioinformatics Tools
  ☆18Updated 4 years ago
• pachterlab / scRNA-Seq-TCC-prep
  Preprocessing of single-cell RNA-Seq (deprecated)
  ☆62Updated 6 years ago
• meuleman / epilogos
  Methods for summarizing and visualizing multi-biosample functional genomic annotations
  ☆47Updated 10 months ago
• shendurelab / MPRAflow
  A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data
  ☆35Updated last year
• YosefLab / FastProject
  Dimensionality reduction for single cell RNA-seq data
  ☆36Updated 6 years ago
• pachterlab / kite
  kallisto index tag extractor
  ☆20Updated 6 years ago
• fraenkel-lab / OmicsIntegrator
  This repository is the working directory for the Garnet-Forest bundle of python scripts for analyzing diverse forms of 'omic' data in a n…
  ☆31Updated 7 years ago
• rhondabacher / SCnorm
  Normalization for single cell RNA-seq data
  ☆51Updated 7 months ago
• mikelove / zinbwave-deseq2
  Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq
  ☆30Updated 5 years ago
• Danko-Lab / rtfbs_db
  Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.
  ☆23Updated 7 years ago
• czbiohub-sf / cerebra
  A tool for fast and accurate summarizing of variant calling format (VCF) files
  ☆61Updated 3 years ago
• ncbi / scPopCorn
  A python tool to do comparative analysis of mulitple single cell datasets.
  ☆21Updated 6 years ago
• rajanil / msCentipede
  A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.
  ☆26Updated 9 years ago
• caleblareau / immune_cell_signature_genes
  Repository for signature genes from Immune Cell Atlas
  ☆18Updated 6 years ago
• lamortenera / epicseg
  Chromatin segmentation in R
  ☆19Updated 8 years ago
• mikessh / migec
  A RepSeq processing swiss-knife
  ☆41Updated last year
• jtleek / svaseq
  Analysis for svaseq paper
  ☆20Updated 11 years ago
• cgat-developers / cgat-core
  Core functionality of the CGAT code
  ☆34Updated 5 months ago
• jpiper / pyDNase
  Python module for the easy handling and analysis of DNase-seq data
  ☆37Updated 6 years ago
• rargelaguet / thesis
  University of Cambridge PhD thesis
  ☆16Updated 5 years ago
• slowkow / cellguide
  🧭 Navigate single-cell RNA-seq datasets in your web browser.
  ☆30Updated 2 years ago
• kieranrcampbell / ouija
  Descriptive probabilistic marker gene approach to single-cell pseudotime inference
  ☆31Updated 6 years ago
• greenelab / multi-plier
  An unsupervised transfer learning approach for rare disease transcriptomics
  ☆46Updated 6 years ago
• slowkow / allelefrequencies
  📂 HLA allele frequencies in tab-delimited format, downloaded from AFND.
  ☆23Updated last year
• markrobinsonuzh / conquer
  consistent quantification of external RNA-seq data sets
  ☆58Updated 2 years ago
• flo-compbio / xlmhg
  XL-mHG: A Semiparametric Test for Enrichment in Ranked Lists.
  ☆13Updated 3 years ago
• pinellolab / haystack_bio
  Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
  ☆46Updated 3 years ago