dkobak / finer-tsne
Code for the paper on t-SNE with variable degree of freedom
☆24Updated 4 years ago
Alternatives and similar repositories for finer-tsne:
Users that are interested in finer-tsne are comparing it to the libraries listed below
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Updated 6 years ago
- Splotch is a hierarchical generative probabilistic model for analyzing Spatial Transcriptomics (ST) data☆19Updated last week
- ☆20Updated 3 years ago
- Volume-regularized NMF☆17Updated 2 years ago
- Predict cell cycle phase in a continuum from single-cell RNA-seq data☆12Updated 4 years ago
- R package for differential discovery analyses in high-dimensional cytometry data☆20Updated last month
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆39Updated 3 years ago
- A tutorial on NMFreg applied to cerebellum data.☆12Updated 4 years ago
- Parallel opt-SNE implementation with Python wrapper☆37Updated 2 years ago
- ☆12Updated last year
- ☆14Updated 5 years ago
- ☆12Updated 6 years ago
- scRNA-seq data visualization from scrattch☆26Updated 11 months ago
- R package for dimensionality reduction of small datasets☆68Updated 2 months ago
- Bootstrap imputation for scRNAseq data☆12Updated 4 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆13Updated 5 years ago
- tGPLVM: A Nonparametric, Generative Model for Manifold Learning with scRNA-seq experimental data☆17Updated 5 years ago
- Multi-omics studies are available here☆51Updated 2 years ago
- A library to simulate single-cell data☆2Updated last year
- A quantitative framework for evaluating data structure preservation by dimensionality reduction techniques☆15Updated 3 years ago
- Exploring dimension-reduced embeddings☆110Updated 2 years ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆13Updated 5 years ago
- Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets☆105Updated last year
- Bayesian model selection to detect zero-inflated genes☆8Updated 4 years ago
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Updated 7 years ago
- Single-cell Hierarchical Poisson Factorization☆68Updated 2 years ago
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆54Updated 2 years ago
- Marker Selection by matching manifolds and elastic net☆23Updated 5 months ago
- ☆21Updated 6 years ago
- Out-of-Core Principal Component Analysis☆19Updated 7 years ago