ernfrid / diagnose_dupsLinks
A tool to examine duplicate read characteristics in a BAM file
☆12Updated 7 years ago
Alternatives and similar repositories for diagnose_dups
Users that are interested in diagnose_dups are comparing it to the libraries listed below
Sorting:
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- A tool for Read Multi-Mapper Resolution☆23Updated 8 years ago
- Haplotype-based somatic genome simulator☆10Updated 8 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- ☆11Updated 6 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 4 months ago
- ☆12Updated last month
- Correctly counting molecules using unique molecular identifiers (UMIs)☆9Updated 3 years ago
- R package to quickly obtain count vectors from indexed bam files☆15Updated last week
- A curated list of awesome clonality and tumor heterogeneity resources☆15Updated 6 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆17Updated 6 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆22Updated 3 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Updated 9 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆16Updated last year
- ☆16Updated 3 weeks ago
- ☆12Updated 5 years ago
- Building the constrained coding regions (CCR) model☆16Updated 6 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 10 months ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- Allele frequency filter app☆14Updated 3 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 7 years ago
- ☆14Updated 2 years ago