ernfrid / diagnose_dupsLinks
A tool to examine duplicate read characteristics in a BAM file
☆12Updated 7 years ago
Alternatives and similar repositories for diagnose_dups
Users that are interested in diagnose_dups are comparing it to the libraries listed below
Sorting:
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- ☆12Updated 3 months ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- R package to quickly obtain count vectors from indexed bam files☆15Updated 2 months ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 3 weeks ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Updated 9 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- An Expectation-Maximization algorithm to infer mutational signatures☆25Updated 8 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Rcount: simple and flexible RNA-Seq read counting☆12Updated 3 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated 2 weeks ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- ☆21Updated last week
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 4 years ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆31Updated 3 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- ☆12Updated 5 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- ☆37Updated 5 years ago
- ☆22Updated 8 years ago
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆17Updated 7 months ago
- ☆13Updated 8 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 7 years ago
- A tool for Read Multi-Mapper Resolution☆24Updated 8 years ago
- ☆11Updated 7 years ago