A tool to examine duplicate read characteristics in a BAM file
☆12Dec 8, 2017Updated 8 years ago
Alternatives and similar repositories for diagnose_dups
Users that are interested in diagnose_dups are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Concordance between variant callers☆17Nov 27, 2014Updated 11 years ago
- The original version of MGA has been archived - please see https://github.com/crukci-bioinformatics/mga2 instead.☆24Apr 15, 2021Updated 5 years ago
- Fast Structural Variation Detection Toolbox☆19Feb 16, 2015Updated 11 years ago
- Fast and Accurate Classification of Sequences using Bloom filters☆16Apr 19, 2023Updated 3 years ago
- Basic, no assumptions, multi-pileup☆24Mar 26, 2014Updated 12 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Simple interface to BioMart (Python -> rpy2 -> R/BioConductor's biomaRt)☆16May 21, 2014Updated 12 years ago
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆43Sep 16, 2021Updated 4 years ago
- Faster manipulation of dendrogram objects in R.☆15May 22, 2015Updated 11 years ago
- ☆12Feb 19, 2017Updated 9 years ago
- Software for Nanopore Analysis☆10Mar 14, 2018Updated 8 years ago
- INC-Seq: Accurate single molecule reads using nanopore sequencing☆16Sep 11, 2020Updated 5 years ago
- Genomics database manager☆25Mar 3, 2014Updated 12 years ago
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆27Oct 5, 2015Updated 10 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50May 8, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Accurate read-based metagenome characterization using a hierarchical suite of unique signatures. Please visit our homepage:☆23Jan 29, 2019Updated 7 years ago
- perform genotype-phenotype-association tests on a VCF with logistic regression.☆20Dec 15, 2015Updated 10 years ago
- Variant Caller Analysis Dashboard and Data Management System☆36Feb 8, 2016Updated 10 years ago
- A configurable de novo assembly pipeline☆30Jun 29, 2016Updated 10 years ago
- compressed, queryable variation graphs☆11Jun 25, 2015Updated 11 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11May 21, 2026Updated 2 months ago
- Infrastructure code to support DNA pipeline☆38May 5, 2015Updated 11 years ago
- FinalVersions☆17Apr 3, 2017Updated 9 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Oct 22, 2019Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- create a gemini-compatible database from a VCF☆55Jan 5, 2021Updated 5 years ago
- A python script used to annotate genomic intervals.☆18May 29, 2020Updated 6 years ago
- Application for inferring subclonal composition and evolution from whole-genome sequencing data.☆115Oct 12, 2022Updated 3 years ago
- Use somatic mutations to choose a personalized cancer vaccine (tumor-specific immunogenic peptides)☆16Sep 23, 2016Updated 9 years ago
- under construction☆14Apr 20, 2017Updated 9 years ago
- Create timecourse "fish plots" that show changes in the clonal architecture of tumors☆172Jan 28, 2026Updated 5 months ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Jun 4, 2024Updated 2 years ago
- variant integration methods for the 1000 Genomes Project☆21Jan 16, 2018Updated 8 years ago
- Homebrew repository for CloudBioLinux: incubator for formulas to end up in homebrew-science☆19Oct 17, 2016Updated 9 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Rapid competitive read demulitplexer. Made with tries.☆23May 19, 2025Updated last year
- What's The Function of these genes?☆22Mar 17, 2017Updated 9 years ago
- Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences☆14Sep 2, 2016Updated 9 years ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Oct 11, 2018Updated 7 years ago
- In-progress projects at Harvard School of Public Health Bioinformatics Core☆42Jul 24, 2018Updated 8 years ago
- MedSavant is a search engine for genetic variants☆22Apr 21, 2016Updated 10 years ago
- ☆12Jul 30, 2022Updated 3 years ago