ernfrid / diagnose_dupsLinks
A tool to examine duplicate read characteristics in a BAM file
☆12Updated 7 years ago
Alternatives and similar repositories for diagnose_dups
Users that are interested in diagnose_dups are comparing it to the libraries listed below
Sorting:
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 7 years ago
- ☆14Updated 2 months ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 2 weeks ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Updated 9 years ago
- R package to quickly obtain count vectors from indexed bam files☆15Updated 4 months ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated 3 months ago
- ☆36Updated 5 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆24Updated 4 years ago
- What's The Function of these genes?☆22Updated 8 years ago
- Stupid Simple Elastic Compute Cloud☆16Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 6 years ago
- Building the constrained coding regions (CCR) model☆16Updated 6 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated 2 months ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- A curated list of awesome clonality and tumor heterogeneity resources☆15Updated 6 years ago
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆17Updated 9 months ago
- A tool for Read Multi-Mapper Resolution☆24Updated 8 years ago
- An Expectation-Maximization algorithm to infer mutational signatures☆25Updated 8 years ago
- Allele frequency filter app☆14Updated 3 years ago
- Impute DNA methylation from WGBS data.☆10Updated 6 years ago