johandahlberg / awesome-10x-genomicsLinks
List of tools and resources related to the 10x Genomics GEMCode/Chromium system
☆86Updated 6 years ago
Alternatives and similar repositories for awesome-10x-genomics
Users that are interested in awesome-10x-genomics are comparing it to the libraries listed below
Sorting:
- Transcript quantification import for modular pipelines☆143Updated 3 months ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 7 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 8 years ago
- NGS-pipe: next-generation sequencing pipelines for precision oncology☆114Updated 6 years ago
- A tool for bigWig files.☆118Updated 7 years ago
- Battenberg algorithm and associated implementation script☆53Updated 5 years ago
- nucleosome calling using ATAC-seq☆109Updated 5 years ago
- ☆78Updated 11 years ago
- ☆72Updated 2 years ago
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆94Updated 8 years ago
- integrated RNA-seq Analysis Pipeline☆84Updated 6 years ago
- Basic operations on the space of numerical functions defined on the genome using lazy evaluators for flexibility and efficiency☆152Updated last year
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆98Updated 2 years ago
- Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps☆124Updated 7 years ago
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- Analysis pipeline for cancer sequencing data☆112Updated 8 months ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 7 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 10 years ago
- Genomic Interactive Visualization Engine☆146Updated 3 years ago
- R package for genomic feature analysis and visualization☆79Updated 8 months ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 5 years ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆77Updated last year
- Learning the Sequence Alignment/Map format☆112Updated 5 months ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Bioconductor package "polyester", devel version. RNA-seq read simulator.☆96Updated 4 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆100Updated 4 years ago