COMBINE-lab / EDSLinks
A simple, intuitive and Efficient single cell binary Data Storage format
☆15Updated 5 years ago
Alternatives and similar repositories for EDS
Users that are interested in EDS are comparing it to the libraries listed below
Sorting:
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆29Updated 2 years ago
- A set of tools for accurate quantitation of single-cell allele-specific expression☆12Updated 2 years ago
- Machine learning use cases for teaching☆13Updated 8 years ago
- Code for EpiMap data browser☆14Updated last year
- ☆10Updated 6 years ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 7 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 6 years ago
- kallisto index tag extractor☆20Updated 6 years ago
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆27Updated 4 months ago
- An R package for multi-dimensional pathway enrichment analysis☆16Updated 3 months ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆10Updated 3 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- Materials presented at the BiocNYC meet-up☆12Updated 6 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 7 years ago
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Updated 2 years ago
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Updated 4 years ago
- Toolkit for QTL mapping and meta-analysis.☆17Updated 3 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated last year
- ☆17Updated last year
- R interface to megadepth: BigWig and BAM related utilities☆12Updated 7 months ago
- R package for benchmarking single cell analysis methods☆32Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Updated 3 years ago
- HSCI/Catalyst Single-cell RNA-Seq Workshop☆19Updated 6 years ago
- tools in python and R for analyzing biological count data, especially from single cell RNAseq☆22Updated last year