berenslab / rna-seq-tsne
The art of using t-SNE for single-cell transcriptomics
☆122Updated 3 months ago
Alternatives and similar repositories for rna-seq-tsne:
Users that are interested in rna-seq-tsne are comparing it to the libraries listed below
- ☆98Updated 5 months ago
- Parallel opt-SNE implementation with Python wrapper☆37Updated 2 years ago
- ☆98Updated 2 years ago
- ☆16Updated 3 years ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆38Updated 2 years ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆72Updated last year
- Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas☆60Updated this week
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 3 years ago
- All the action is on the course webpage -->☆28Updated 4 months ago
- Single-cell Hierarchical Poisson Factorization☆68Updated 2 years ago
- Human cortical cell types☆24Updated 5 years ago
- Creating multi-resolution embeddings and clusters from high dimensional data☆52Updated 5 months ago
- ☆55Updated 4 years ago
- ☆49Updated 3 years ago
- Quantifying experimental perturbations at single cell resolution☆105Updated 5 months ago
- Implementations in both Matlab and R of the SIMLR method. The manuscript of the method is available at: https://www.nature.com/articles/n…☆110Updated 2 weeks ago
- Conditional out-of-distribution prediction☆57Updated 7 months ago
- MS Word template for styling a manuscript for a bioRxiv submission☆37Updated 6 years ago
- Archetypal Analysis network (AAnet)☆31Updated last month
- Code accompanying "Prospective identification of hematopoietic lineage choice by deep learning", Nature methods 2017, DOI:10.1038/nmeth.4…☆20Updated 2 years ago
- Subpopulation detection in high-dimensional single-cell data☆137Updated 4 years ago
- Computational Biology- Spring 2021☆46Updated 3 years ago
- Nonnegative spatial factorization for multivariate count data☆57Updated last year
- Deep learning for single-cell transcript counts☆86Updated last week
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆214Updated 4 years ago
- ☆90Updated 4 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 2 years ago
- Software for processing and analyzing STARmap experiments.☆36Updated 5 years ago
- A software package for analyzing snapshots of developmental processes☆145Updated 2 years ago
- Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)☆37Updated 5 months ago