berenslab / rna-seq-tsneLinks
The art of using t-SNE for single-cell transcriptomics
☆129Updated last year
Alternatives and similar repositories for rna-seq-tsne
Users that are interested in rna-seq-tsne are comparing it to the libraries listed below
Sorting:
- ☆102Updated last year
- Conditional out-of-distribution prediction☆61Updated last year
- A collection of scripts and tools for loading, processing, and handling single cell data.☆76Updated 2 months ago
- An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data☆52Updated 7 years ago
- ☆101Updated 2 years ago
- Parallel opt-SNE implementation with Python wrapper☆38Updated 3 years ago
- Single-cell Hierarchical Poisson Factorization☆73Updated 3 years ago
- Computational Biology- Spring 2021☆48Updated 4 years ago
- Quantifying experimental perturbations at single cell resolution☆112Updated last year
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆42Updated 2 years ago
- Creating multi-resolution embeddings and clusters from high dimensional data☆57Updated last year
- Deep learning for single-cell transcript counts☆88Updated 9 months ago
- Deep learning based processing of Atac-seq data☆131Updated 2 years ago
- BioBombe: Sequentially compressed gene expression features enhances biological signatures☆65Updated last year
- A software package for analyzing snapshots of developmental processes☆151Updated 3 years ago
- ☆48Updated 6 years ago
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- Code accompanying "Prospective identification of hematopoietic lineage choice by deep learning", Nature methods 2017, DOI:10.1038/nmeth.4…☆20Updated 3 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- ☆66Updated 2 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆50Updated 2 years ago
- generalized principal component analysis (GLM-PCA) implemented in python☆60Updated 4 years ago
- Subpopulation detection in high-dimensional single-cell data☆141Updated 5 years ago
- python / numpy / pandas / patsy version of ComBat for removing batch effects.☆105Updated 6 years ago
- ☆16Updated 4 years ago
- Implementations in both Matlab and R of the SIMLR method. The manuscript of the method is available at: https://www.nature.com/articles/n…☆113Updated 2 months ago
- ☆57Updated 5 years ago
- Multi-omics studies are available here☆52Updated 3 years ago
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆76Updated 11 months ago
- data and model repository for single-cell data☆136Updated 2 years ago