The art of using t-SNE for single-cell transcriptomics
☆132Nov 29, 2024Updated last year
Alternatives and similar repositories for rna-seq-tsne
Users that are interested in rna-seq-tsne are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for the paper on t-SNE with variable degree of freedom☆25Aug 5, 2020Updated 6 years ago
- Fast Fourier Transform-accelerated Interpolation-based t-SNE (FIt-SNE)☆609Sep 13, 2021Updated 5 years ago
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆49Feb 7, 2019Updated 7 years ago
- Python Wrapper for FIt-SNE☆46May 11, 2021Updated 5 years ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆54Dec 1, 2025Updated 10 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- supporting code for the multinomial single cell RNA-Seq paper☆54Jan 6, 2021Updated 5 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Sep 24, 2018Updated 8 years ago
- Out-of-Core Principal Component Analysis☆19Dec 25, 2017Updated 8 years ago
- ☆48Jun 21, 2019Updated 7 years ago
- Clustering cells from single cell RNA seq assays☆46Nov 19, 2018Updated 7 years ago
- R package for analyzing single-cell RNA-seq data☆180Feb 29, 2024Updated 2 years ago
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆41Sep 17, 2021Updated 5 years ago
- ☆20Mar 28, 2017Updated 9 years ago
- SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data☆19Mar 27, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Single-cell Orientation Tracing☆21Jan 23, 2022Updated 4 years ago
- R package for integrating and analyzing multiple single-cell datasets☆435Aug 18, 2026Updated 2 months ago
- This contains the dataset for comparing scRNA-seq analysis methods☆92Aug 26, 2020Updated 6 years ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Aug 11, 2020Updated 6 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆61Jul 5, 2019Updated 7 years ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆233Jul 2, 2026Updated 3 months ago
- Lightweight pipeline for processing droplet-based single-cell RNA-seq data☆18Nov 4, 2020Updated 5 years ago
- PRObabilistic Simulations of ScRNA-seq Tree-like Topologies☆29Jan 10, 2024Updated 2 years ago
- single nuclei RNA-seq analysis toolbox☆10Oct 26, 2016Updated 10 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- CALISTA: Clustering And Lineage Inference in Single Cell Transcriptional Analysis☆10May 16, 2019Updated 7 years ago
- Benchmarking computational single cell ATAC-seq methods☆186Nov 30, 2020Updated 5 years ago
- Funding schemes and travel grant opportunities for postdocs☆11Jun 2, 2018Updated 8 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆41May 6, 2022Updated 4 years ago
- Deep count autoencoder for denoising scRNA-seq data☆275Mar 21, 2024Updated 2 years ago
- Collections of library structure and sequence of popular single cell genomic methods☆513Apr 16, 2026Updated 6 months ago
- Imputation method for scRNA-seq based on low-rank approximation☆82Dec 14, 2023Updated 2 years ago
- Single-cell identity definition using random forest modelling and recursive feature elimination☆12Aug 15, 2020Updated 6 years ago
- Geometry-preserving random sampling☆98Oct 29, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- SAME (Single-cell RNA-seq Aggregated clustering via Mixture model Ensemble): Cluster ensemble for single-cell RNA-seq data☆16May 4, 2021Updated 5 years ago
- R package for the inference of cell fate bias from single-cell RNA-seq data.☆22Jun 14, 2022Updated 4 years ago
- ☆12Aug 24, 2019Updated 7 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆32Jun 14, 2022Updated 4 years ago
- An R package implementing the UMAP dimensionality reduction method.☆371Oct 4, 2026Updated 3 weeks ago
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆78Jun 10, 2026Updated 4 months ago
- Identified novel mouse spermatogenesis biomarkers based on single-cell RNA sequencing data☆11Jun 7, 2022Updated 4 years ago