Alternatives and similar repositories for rna-seq-tsne

Users that are interested in rna-seq-tsne are comparing it to the libraries listed below

• KrishnaswamyLab / SAUCIE
  ☆99Updated 8 months ago
• omiq-ai / Multicore-opt-SNE
  Parallel opt-SNE implementation with Python wrapper
  ☆37Updated 2 years ago
• KrishnaswamyLab / scprep
  A collection of scripts and tools for loading, processing, and handling single cell data.
  ☆72Updated last year
• klarman-cell-observatory / scPhere
  ☆100Updated 2 years ago
• theislab / trVAE
  Conditional out-of-distribution prediction
  ☆62Updated 10 months ago
• chanzuckerberg / scRNA-python-workshop
  All the action is on the course webpage -->
  ☆29Updated 6 months ago
• KrishnaswamyLab / AAnet
  Archetypal Analysis network (AAnet)
  ☆33Updated 4 months ago
• cantinilab / OT-scOmics
  This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…
  ☆38Updated 2 years ago
• scvae / scvae
  Deep learning for single-cell transcript counts
  ☆88Updated 2 months ago
• KrishnaswamyLab / Multiscale_PHATE
  Creating multi-resolution embeddings and clusters from high dimensional data
  ☆53Updated 8 months ago
• calico / scnym
  Semi-supervised adversarial neural networks for classification of single cell transcriptomics data
  ☆75Updated 5 months ago
• marrlab / HematoFatePrediction
  Code accompanying "Prospective identification of hematopoietic lineage choice by deep learning", Nature methods 2017, DOI:10.1038/nmeth.4…
  ☆20Updated 2 years ago
• Teichlab / MultiMAP
  MultiMAP for integration of single cell multi-omics
  ☆56Updated last year
• PrincetonUniversity / DP_GP_cluster
  ☆80Updated last year
• TaylorResearchLab / scedar
  Single-cell exploratory data analysis for RNA-Seq
  ☆40Updated 4 years ago
• greenelab / BioBombe
  BioBombe: Sequentially compressed gene expression features enhances biological signatures
  ☆65Updated 11 months ago
• theislab / paga
  Mapping out the coarse-grained connectivity structures of complex manifolds.
  ☆218Updated 5 years ago
• KrishnaswamyLab / MELD
  Quantifying experimental perturbations at single cell resolution
  ☆108Updated 8 months ago
• KrishnaswamyLab / SingleCellWorkshop
  ☆90Updated 4 years ago
• broadinstitute / wot
  A software package for analyzing snapshots of developmental processes
  ☆146Updated 2 years ago
• romain-lopez / scVI-reproducibility
  Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"
  ☆57Updated 6 years ago
• Teichlab / bbknn
  Batch balanced KNN
  ☆161Updated last year
• berenslab / umi-normalization
  Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…
  ☆40Updated 3 years ago
• jacoblevine / PhenoGraph
  Subpopulation detection in high-dimensional single-cell data
  ☆138Updated 4 years ago
• AltschulerWu-Lab / scScope
  ☆49Updated 5 years ago
• AllenInstitute / MTG_celltypes
  Human cortical cell types
  ☆24Updated 5 years ago
• pachterlab / CBP_2021
  ☆16Updated 3 years ago
• willtownes / glmpca-py
  generalized principal component analysis (GLM-PCA) implemented in python
  ☆60Updated 4 years ago
• stanleyn / Comp790-166-Comp-Bio
  Computational Biology- Spring 2021
  ☆46Updated 3 years ago
• BatzoglouLabSU / SIMLR
  Implementations in both Matlab and R of the SIMLR method. The manuscript of the method is available at: https://www.nature.com/articles/n…
  ☆111Updated last month