NikolayOskolkov / tSNE_vs_UMAP_GlobalStructure
Here we address the global structure preservation by tSNE and UMAP
☆48Updated 5 years ago
Alternatives and similar repositories for tSNE_vs_UMAP_GlobalStructure:
Users that are interested in tSNE_vs_UMAP_GlobalStructure are comparing it to the libraries listed below
- generalized principal component analysis (GLM-PCA) implemented in python☆60Updated 4 years ago
- Here I explain the math behind UMAP and show how to program it from scratch in Python☆38Updated 4 years ago
- Bootstrap Elastic net regression from Time Series is a vector-autoregressive approach to causal inference from gene expression time serie…☆20Updated 2 years ago
- Tools for building and manipulating graphs in Python☆41Updated 2 years ago
- Python translation of the hybrid dynamicTreeCut method as created by Peter Langfelder and Bin Zhang.☆40Updated 3 years ago
- Attraction-Repulsion Spectrum in Neighbor Embeddings☆30Updated 2 years ago
- Latent spaces for single cells☆21Updated last year
- Maximum mean discrepancy comparisons for single cell profiling experiments☆15Updated 3 years ago
- Contrastive Poisson latent variable models (CPLVMs)☆11Updated 3 years ago
- A Library for Denoising Single-Cell Data with Random Matrix Theory☆37Updated last year
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆70Updated 9 months ago
- ☆16Updated 3 years ago
- Python, R and Matlab implementation of Brown's Method to combine dependent P-values☆25Updated 7 years ago
- A spectral method for assessing and combining multiple data visualizations☆49Updated last year
- Fast Inference of Networks from Directed Regulations☆22Updated last year
- Density-preserving data visualization tools den-SNE and densMAP☆110Updated 3 years ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆38Updated 2 years ago
- Testing if UMAP/tSNE overfit their intrinsic dimensionality☆15Updated last year
- An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data☆7Updated 7 years ago
- Creating multi-resolution embeddings and clusters from high dimensional data☆53Updated 6 months ago
- Systematically learn and evaluate manifolds from high-dimensional data☆97Updated last year
- A library to simulate single-cell data☆2Updated 2 years ago
- A fast, accurate, and modularized dimensionality reduction approach based on diffusion harmonics and graph layouts. Escalates to millions…☆48Updated 4 years ago
- Archetypal Analysis network (AAnet)☆32Updated 2 months ago
- Parallel opt-SNE implementation with Python wrapper☆37Updated 2 years ago
- This is a read-only mirror of the CRAN R package repository. SNFtool — Similarity Network Fusion☆20Updated 3 years ago
- Python Wrapper for FIt-SNE☆45Updated 3 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Source code for integrative nonnegative matrix factorization☆18Updated 6 years ago
- HiDeF (Hierarchical community Decoding Framework)☆14Updated last year