kauralasoo / wiggleplotr
A small R package to make sequencing read coverage plots in R.
☆37Updated 2 years ago
Alternatives and similar repositories for wiggleplotr:
Users that are interested in wiggleplotr are comparing it to the libraries listed below
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 2 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆28Updated last month
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 6 years ago
- A tidy interface for coverage analysis☆24Updated 5 years ago
- Genomic plot in trellis layout☆39Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 8 months ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆25Updated last year
- a set of NGS pipelines☆24Updated 2 weeks ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- R package wrapping bedtools☆39Updated last month
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year
- Flexible Bayesian inference of mutational signatures☆34Updated 2 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated 2 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- An Efficient Multiple-Testing Adjustment for eQTL Studies that Accounts for Linkage Disequilibrium between Variants☆10Updated 5 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- Transcript quantification import with automatic metadata detection☆68Updated 2 months ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆28Updated last month
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data☆15Updated 4 years ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline☆21Updated 3 months ago
- DriverPower☆26Updated 3 months ago
- VarGen is an R package designed to get a list of variants related to a disease. It just need an OMIM morbid ID as input and optionally a…☆17Updated last year
- Enriched Domain Detector for ChIP-seq data☆16Updated 2 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆45Updated 5 months ago