mrmckain / Fast-PlastLinks
Automated de novo assembly of whole chloroplast genomes.
☆45Updated 8 months ago
Alternatives and similar repositories for Fast-Plast
Users that are interested in Fast-Plast are comparing it to the libraries listed below
Sorting:
- Tutorial about R package PopGenome☆41Updated 6 years ago
- Detecting natural selection from population-based genetic data☆27Updated 6 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated this week
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆21Updated 2 years ago
- SambaR: Snp datA Management and Basic Analyses in R☆28Updated last month
- Synteny Imager☆62Updated 9 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- ☆44Updated 8 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆67Updated 7 years ago
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆39Updated 5 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆49Updated last year
- A statistical framework for ploidy estimation using NGS short-read data☆59Updated 7 years ago
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆36Updated last year
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- Genome Annotation Without Nightmares☆45Updated 4 months ago
- Repository for speciation genomics website☆25Updated 10 months ago
- Tutorials on evolutionary genomics☆44Updated 3 years ago
- Quantifying Introgression via Branch Lengths☆52Updated 2 years ago
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆59Updated 7 months ago
- Tools and Utilities for msmc and msmc2☆47Updated last year
- A pipeline that accepts a VCF file to run through Admixture☆60Updated 5 months ago
- Infer demographic history with the Moran model☆47Updated 3 months ago
- paml documentation and tutorials☆56Updated 2 weeks ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 6 months ago
- Interim data for the Darwin Tree of Life Project☆33Updated 4 years ago
- ☆39Updated last year
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated 2 years ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆37Updated last year