Alternatives and similar repositories for Fast-Plast

Users that are interested in Fast-Plast are comparing it to the libraries listed below

• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆44Updated 6 years ago
• mfoll / BayeScan
  Detecting natural selection from population-based genetic data
  ☆28Updated 6 years ago
• rhysf / Synima
  Synteny Imager
  ☆64Updated 3 months ago
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆74Updated 4 years ago
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆31Updated 2 weeks ago
• genomeannotation / GAG
  Generates an NCBI .tbl file of annotations on a genome.
  ☆68Updated 7 years ago
• nt246 / physalia-lcwgs
  Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
  ☆67Updated last week
• fethalen / Patchwork
  Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data
  ☆36Updated last year
• ranwez / MACSE_V2_PIPELINES
  This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…
  ☆35Updated 2 years ago
• rapidspeciation / biodiversity_genomics_course
  biodiversity genomics course by Nicol Rueda, Karin Näsvall and Joana Meier from the Wellcome Sanger Institute
  ☆57Updated 4 months ago
• mossmatters / phyloscripts
  Helper scripts for processing and visualization of phylogenetics datasets
  ☆30Updated last year
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆85Updated last year
• BenoitMorel / ParGenes
  A massively parallel tool for model selection and tree inference on thousands of genes
  ☆50Updated last year
• ForBioPhylogenomics / tutorials
  Tutorials on phylogenomic analyses for the ForBio Phylogenomics course
  ☆37Updated last year
• stevemussmann / admixturePipeline
  A pipeline that accepts a VCF file to run through Admixture
  ☆63Updated 9 months ago
• miriammiyagi / QuIBL
  Quantifying Introgression via Branch Lengths
  ☆54Updated 3 years ago
• simonhmartin / tutorials
  Tutorials on evolutionary genomics
  ☆46Updated 3 years ago
• speciationgenomics / speciationgenomics.github.io
  Repository for speciation genomics website
  ☆26Updated 2 months ago
• esayyari / DiscoVista
  ☆42Updated 2 years ago
• clwgg / nQuire
  A statistical framework for ploidy estimation using NGS short-read data
  ☆62Updated 7 years ago
• aubombarely / Organelle_PBA
  A software to assemble chloroplast and mitochodrial genomes using PacBio data
  ☆40Updated 5 years ago
• PuttickMacroevolution / MCMCtreeR
  MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree
  ☆45Updated 5 years ago
• mapleforest / HaploMerger2
  ☆44Updated 8 years ago
• nylander / catfasta2phyml
  Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file
  ☆73Updated last year
• darwintreeoflife / darwintreeoflife.data
  Interim data for the Darwin Tree of Life Project
  ☆33Updated 5 years ago
• josephryan / estimate_genome_size.pl
  Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish
  ☆57Updated 2 years ago
• HuffordLab / GenomeQC
  ☆33Updated 4 years ago
• alachins / raisd
  RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors
  ☆36Updated last year
• speciationgenomics / presentations
  Presentations from the course
  ☆38Updated 2 years ago
• schneebergerlab / findGSE
  findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…
  ☆38Updated last year