Automated de novo assembly of whole chloroplast genomes.
☆48Sep 23, 2024Updated last year
Alternatives and similar repositories for Fast-Plast
Users that are interested in Fast-Plast are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆23Jan 21, 2026Updated 3 months ago
- Plastid Genome Annotator☆54Oct 29, 2020Updated 5 years ago
- A R tool to parse and visualize chloroplast genomes☆12Dec 1, 2021Updated 4 years ago
- Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)☆379Feb 13, 2025Updated last year
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆198Feb 4, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Bash scripts for analysis of Hyb-Seq data (from raw reads to species trees/networks)☆20Apr 25, 2026Updated last week
- Pipeline for generate Ks plots of transcriptome data.☆12Dec 27, 2017Updated 8 years ago
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆11Sep 29, 2014Updated 11 years ago
- Recovering genes from targeted sequence capture data☆133Jan 9, 2026Updated 3 months ago
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆40May 21, 2020Updated 5 years ago
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis☆15Aug 27, 2023Updated 2 years ago
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 6 years ago
- ☆14Mar 18, 2025Updated last year
- ALignment Transformation EnviRonment☆11May 8, 2018Updated 7 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Plann: a command-line application for annotating plastome sequences☆12Aug 5, 2022Updated 3 years ago
- Visualing species tree from ASTRAL with gene tree discordance☆30May 13, 2025Updated 11 months ago
- Phylogenetic penalized likelihood☆55Jun 27, 2025Updated 10 months ago
- An R package to help in plotting PCA results nicely.☆12Jan 16, 2020Updated 6 years ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Apr 29, 2025Updated last year
- ☆22Oct 31, 2025Updated 6 months ago
- A tool to extract and annotate genes from raw RNA-seq reads.☆10Dec 20, 2024Updated last year
- STAG: Species Tree from All Genes☆36Dec 10, 2018Updated 7 years ago
- defusion☆14Aug 24, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Software GMATA for SSR mining, marker designing, genotyping, plot etc.☆17Oct 6, 2025Updated 6 months ago
- An Example of Subgenome Phasing for Complex Allopolyploidy☆15Nov 6, 2025Updated 5 months ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- Fast, accurate species tree estimation.☆12Aug 29, 2024Updated last year
- Methylatino phasing using PacBio CCS reads☆14Dec 13, 2024Updated last year
- ☆22Oct 16, 2024Updated last year
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated last year
- A statistical framework for ploidy estimation using NGS short-read data☆62Apr 5, 2018Updated 8 years ago
- Assembly of Phylogenomic Datasets from High-Throughput Sequencing data☆39Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- PhyloSD: Phylogenomic Subgenome Detection pipeline☆11Jun 24, 2022Updated 3 years ago
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆24May 30, 2023Updated 2 years ago
- iTAK☆49Apr 8, 2026Updated 3 weeks ago
- A tool to infer species tree and phylogenetic network from multilocus data☆32Jul 2, 2020Updated 5 years ago
- MegaSSR is a robust online server that identifies Simple Sequence Repeats (SSR) and enables the design of SSR markers in high-throughput …☆11Nov 25, 2024Updated last year
- ☆19Dec 5, 2020Updated 5 years ago
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆70Mar 23, 2025Updated last year