Alternatives and similar repositories for PGA:

Users that are interested in PGA are comparing it to the libraries listed below

• chenlianfu / geta
  ☆78Updated 9 months ago
• BGI-shenzhen / RectChr
  Multi-level visualization of genomic statistical variables on rectangular chromosomes
  ☆88Updated 4 months ago
• fanagislab / GCE
  GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…
  ☆50Updated 5 years ago
• tbenavi1 / genomescope2.0
  Reference-free profiling of polyploid genomes
  ☆115Updated 9 months ago
• xtmtd / PLWS
  Phylogenomics from Low-coverage Whole-genome Sequencing
  ☆38Updated 4 years ago
• steuernb / NLR-Annotator
  NLR-Annotator upload
  ☆65Updated last year
• YangJianshun / LINKVIEW2
  DNA序列比对结果 可视化展示工具
  ☆47Updated 2 years ago
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆80Updated 3 years ago
• hewm2008 / VCF2PCACluster
  A new simple and efficient software to PCA and Cluster For popolation VCF File
  ☆70Updated 2 months ago
• jamiemcg / BUSCO_phylogenomics
  BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
  ☆64Updated 6 months ago
• yjx1217 / RMRB
  This is an archive version of old RepBase library (v20170127) for RepeatMasker.
  ☆33Updated 3 years ago
• moshi4 / CafePlotter
  A tool for plotting CAFE5 gene family expansion/contraction result
  ☆29Updated last year
• qiao-xin / DupGen_finder
  A pipeline used to identify different modes of duplicated gene pairs
  ☆98Updated last month
• xuzhougeng / Genomic_tools
  Genomic related tools
  ☆70Updated 3 years ago
• c-zhou / yahs
  Yet another Hi-C scaffolding tool
  ☆143Updated 5 months ago
• meiyang12 / Genome-annotation-pipeline
  Genome annotation pipeline
  ☆58Updated 9 months ago
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆47Updated 5 months ago
• zhangrengang / TEsorter
  TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes
  ☆94Updated 2 months ago
• JiaoLaboratory / CRAQ
  Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement
  ☆59Updated 3 months ago
• DessimozLab / OMArk
  ☆71Updated last month
• BGI-shenzhen / VCF2Dis
  VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…
  ☆88Updated last week
• aubombarely / Organelle_PBA
  A software to assemble chloroplast and mitochodrial genomes using PacBio data
  ☆38Updated 4 years ago
• RemiAllio / MitoFinder
  MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
  ☆101Updated last year
• millanek / tutorials
  Tutorials on phylogenetic and phylogenomic inference
  ☆43Updated 2 months ago
• mahulchak / svmu
  A program to call variants from genome alignment
  ☆79Updated last year
• kiranbandi / synvisio
  SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …
  ☆84Updated last year
• bichangwei / PMAT
  An efficient assembly tool for plant mitochondrial genome
  ☆62Updated 10 months ago
• oushujun / LTR_FINDER_parallel
  A parallel wrapper for LTR_FINDER
  ☆49Updated 3 weeks ago
• rhysf / Synima
  Synteny Imager
  ☆61Updated 7 months ago
• hardingnj / xpclr
  Code to compute the XP-CLR statistic to infer natural selection
  ☆95Updated 2 years ago