quxiaojian / PGALinks
Plastid Genome Annotator
☆54Updated 5 years ago
Alternatives and similar repositories for PGA
Users that are interested in PGA are comparing it to the libraries listed below
Sorting:
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆102Updated 2 months ago
- Neural network classification of TE☆97Updated 3 months ago
- A tool for plotting CAFE5 gene family expansion/contraction result☆35Updated 2 years ago
- ☆88Updated last month
- Reference-free profiling of polyploid genomes☆139Updated 3 months ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆77Updated last month
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆53Updated 5 years ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆85Updated 4 years ago
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆70Updated 9 months ago
- A parallel wrapper for LTR_FINDER☆55Updated 9 months ago
- ☆86Updated last year
- This is the standalone version of the EviAnn pipeline☆133Updated this week
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆110Updated last week
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆109Updated this week
- NLR-Annotator upload☆76Updated 2 years ago
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆91Updated last year
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆111Updated 4 months ago
- Version 5 of the CAFE phylogenetics software☆158Updated 11 months ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆133Updated last year
- A pipeline used to identify different modes of duplicated gene pairs☆116Updated 5 months ago
- A program to call variants from genome alignment☆81Updated 8 months ago
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆40Updated 5 years ago
- Automates running of OrthoMCL software from http://orthomcl.org/common/downloads/software/v2.0/☆80Updated 5 years ago
- DNA序列比对结果 可视化展示工具☆57Updated 3 years ago
- Yet another Hi-C scaffolding tool☆169Updated last year
- Tutorials on phylogenetic and phylogenomic inference☆49Updated 8 months ago
- SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …☆93Updated last month
- ☆18Updated 4 years ago
- MITObim - mitochondrial baiting and iterative mapping☆113Updated 5 years ago
- Foreign Contamination Screening caller scripts and documentation☆155Updated 10 months ago