Plastid Genome Annotator
☆58Oct 29, 2020Updated 5 years ago
Alternatives and similar repositories for PGA
Users that are interested in PGA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)☆399Feb 13, 2025Updated last year
- ☆25Oct 16, 2024Updated 2 years ago
- Automated de novo assembly of whole chloroplast genomes.☆46Sep 27, 2026Updated 2 weeks ago
- chloroplast genome assembly using long reads data☆18Jul 8, 2025Updated last year
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆41May 21, 2020Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Assembly chloroplast genome and validate conformation☆15May 21, 2024Updated 2 years ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆150Nov 6, 2024Updated last year
- MITObim - mitochondrial baiting and iterative mapping☆118Dec 29, 2020Updated 5 years ago
- Graph-based Sequence Assembly Toolkit☆24Sep 11, 2026Updated last month
- GeneMiner2 is an enhanced version of our previous developments Easy353 and GeneMiner☆20Updated this week
- Phasing of dikaryotic fungal genome assemblies☆13Mar 1, 2023Updated 3 years ago
- Dynamic Elongation of a Genome Assembly Path☆31Jul 27, 2026Updated 2 months ago
- common bioinformatic scripts☆17Apr 28, 2021Updated 5 years ago
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆201Feb 4, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆220Jun 30, 2026Updated 3 months ago
- An efficient assembly tool for plant mitochondrial genome☆71May 31, 2024Updated 2 years ago
- Yet another Hi-C scaffolding tool☆23Oct 23, 2024Updated last year
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆175Nov 4, 2025Updated 11 months ago
- DeepBSA is a novel bulked segregant analysis (BSA) software for the dissection of complex traits.☆24May 15, 2026Updated 5 months ago
- Telomere compliment tools☆27Nov 17, 2025Updated 11 months ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆32Oct 3, 2026Updated 2 weeks ago
- Automates running of OrthoMCL software from http://orthomcl.org/common/downloads/software/v2.0/☆79Jul 31, 2020Updated 6 years ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆250Sep 6, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Improved long-read assembly by preserving contained reads☆29Aug 22, 2024Updated 2 years ago
- A Snakemake workflow for recovery of plastid genomes from metagenomic samples☆11Nov 16, 2024Updated last year
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆180Oct 20, 2024Updated last year
- ☆16Jul 25, 2021Updated 5 years ago
- use long sequenced reads to close gaps in assemblies☆41Sep 4, 2018Updated 8 years ago
- Assembly by Reduced Complexity (ARC)☆41Mar 29, 2016Updated 10 years ago
- ☆29Jul 16, 2022Updated 4 years ago
- A novel algorithm with high detection power for BSA-Seq data analysis - the significant structural variant method☆36Jul 15, 2026Updated 3 months ago
- Custom scripts used in "Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus"☆11Oct 15, 2020Updated 6 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆116Sep 2, 2025Updated last year
- A R package for QTLseq.☆13Jun 17, 2026Updated 4 months ago
- ☆25Sep 22, 2026Updated 3 weeks ago
- A organelle de novo genome assembly toolkit☆88Feb 22, 2025Updated last year
- JTK -- a regional diploid genome assembler☆27Apr 22, 2026Updated 5 months ago
- Visualing species tree from ASTRAL with gene tree discordance☆35Aug 21, 2026Updated last month
- Fast and accurate de novo assembler for long reads☆407May 10, 2024Updated 2 years ago