Alternatives and similar repositories for MitoFinder

Users that are interested in MitoFinder are comparing it to the libraries listed below

• zhangrengang / TEsorter
  TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes
  ☆102Updated 2 months ago
• hahnlab / CAFE5
  Version 5 of the CAFE phylogenetics software
  ☆158Updated 11 months ago
• tbenavi1 / genomescope2.0
  Reference-free profiling of polyploid genomes
  ☆139Updated 3 months ago
• EVidenceModeler / EVidenceModeler
  source code for EVM
  ☆120Updated last year
• linzhi2013 / MitoZ
  MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes
  ☆133Updated last year
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆190Updated 8 months ago
• kiranbandi / synvisio
  SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …
  ☆93Updated last month
• eldariont / svim-asm
  Structural Variant Identification Method using Genome Assemblies
  ☆132Updated 3 years ago
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆85Updated 4 years ago
• qiao-xin / DupGen_finder
  A pipeline used to identify different modes of duplicated gene pairs
  ☆116Updated 5 months ago
• chasewnelson / SNPGenie
  Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
  ☆120Updated 2 years ago
• chrishah / MITObim
  MITObim - mitochondrial baiting and iterative mapping
  ☆113Updated 5 years ago
• ncbi / fcs
  Foreign Contamination Screening caller scripts and documentation
  ☆155Updated 9 months ago
• qjiangzhao / TEtrimmer
  TEtrimmer: a novel tool to automate manual curation of transposable elements
  ☆110Updated last week
• LiLabAtVT / DeepTE
  Neural network classification of TE
  ☆97Updated 3 months ago
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆203Updated 5 months ago
• alekseyzimin / EviAnn_release
  This is the standalone version of the EviAnn pipeline
  ☆133Updated last week
• genomehubs / blobtoolkit
  Interactive quality assessment of genome assemblies
  ☆116Updated last month
• MetazoaPhylogenomicsLab / FANTASIA
  ☆33Updated 4 months ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆165Updated last week
• steuernb / NLR-Annotator
  NLR-Annotator upload
  ☆76Updated 2 years ago
• daewoooo / SVbyEye
  ☆145Updated 2 months ago
• sanger-pathogens / assembly-stats
  Get assembly statistics from FASTA and FASTQ files
  ☆124Updated 2 years ago
• rhysf / Synima
  Synteny Imager
  ☆65Updated 3 weeks ago
• chenlianfu / geta
  ☆86Updated last year
• sheinasim-USDA / HiFiAdapterFilt
  Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
  ☆102Updated last year
• medvedevgroup / SibeliaZ
  A fast whole-genome aligner based on de Bruijn graphs
  ☆156Updated 6 months ago
• apetkau / orthomcl-pipeline
  Automates running of OrthoMCL software from http://orthomcl.org/common/downloads/software/v2.0/
  ☆80Updated 5 years ago
• CSU-KangHu / HiTE
  High-precision TE Annotator
  ☆146Updated last month
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆101Updated last month