RemiAllio / MitoFinderLinks
MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
☆112Updated 5 months ago
Alternatives and similar repositories for MitoFinder
Users that are interested in MitoFinder are comparing it to the libraries listed below
Sorting:
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆103Updated 2 months ago
- Version 5 of the CAFE phylogenetics software☆159Updated 11 months ago
- source code for EVM☆122Updated last year
- Reference-free profiling of polyploid genomes☆141Updated 4 months ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆84Updated 4 years ago
- ☆86Updated last year
- Find, circularise and annotate mitogenome from PacBio assemblies☆191Updated 9 months ago
- ☆34Updated 5 months ago
- This is the standalone version of the EviAnn pipeline☆136Updated this week
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆135Updated last year
- Dfam Transposable Element Tools Docker container.☆101Updated last month
- Structural Variant Identification Method using Genome Assemblies☆134Updated 3 years ago
- A pipeline used to identify different modes of duplicated gene pairs☆117Updated 6 months ago
- Foreign Contamination Screening caller scripts and documentation☆157Updated 10 months ago
- A list of software for pangenomics☆173Updated 2 weeks ago
- Interactive quality assessment of genome assemblies☆118Updated last week
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆120Updated 2 years ago
- NLR-Annotator upload☆76Updated 2 years ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆121Updated 8 months ago
- Make colorful identity heatmaps of genomic sequence☆128Updated last year
- MITObim - mitochondrial baiting and iterative mapping☆114Updated 5 years ago
- Algorithm For Gene Order Reconstruction in Ancestors☆79Updated 5 months ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆54Updated 5 years ago
- Neural network classification of TE☆97Updated 4 months ago
- Synteny Imager☆65Updated last month
- Constructing a pangenome gene graph☆204Updated 6 months ago
- Get assembly statistics from FASTA and FASTQ files☆124Updated 2 years ago
- ☆81Updated 5 years ago
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆111Updated 2 weeks ago
- ☆145Updated 3 months ago