MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
☆115Sep 2, 2025Updated 10 months ago
Alternatives and similar repositories for MitoFinder
Users that are interested in MitoFinder are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Find, circularise and annotate mitogenome from PacBio assemblies☆197May 11, 2025Updated last year
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆148Nov 6, 2024Updated last year
- Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)☆388Feb 13, 2025Updated last year
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆125Jun 18, 2026Updated 2 weeks ago
- A software for gap filling in genome assemblies☆10Aug 12, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Repeat-aware polishing genomes assembled using HiFi long reads☆105Apr 7, 2026Updated 2 months ago
- mtGrasp: de novo reference-grade mitochondrial genome assembly and standardization☆24Updated this week
- A genome assembly assessment pipeline.☆38Jun 5, 2026Updated last month
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆401Apr 22, 2026Updated 2 months ago
- Mitochondrial Genome Assembly☆17Feb 21, 2024Updated 2 years ago
- A program for assessing the T2T genome continuity and completeness☆95Feb 28, 2026Updated 4 months ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆149Apr 13, 2026Updated 2 months ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆241Sep 6, 2024Updated last year
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆111Jul 23, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆37Jun 6, 2022Updated 4 years ago
- SRF: Satellite Repeat Finder☆105Jan 8, 2024Updated 2 years ago
- Synteny and Rearrangement Identifier☆474Jun 20, 2026Updated 2 weeks ago
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆113Feb 28, 2026Updated 4 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Jul 26, 2023Updated 2 years ago
- ☆42May 19, 2025Updated last year
- MitoDNA extending assembler from NGS data☆23Mar 19, 2026Updated 3 months ago
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆198Feb 4, 2024Updated 2 years ago
- Align proteins to genomes with splicing and frameshift☆405Jan 5, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Generating UTRs from SHort Reads☆12Sep 28, 2020Updated 5 years ago
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆207Nov 23, 2025Updated 7 months ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆176Jun 23, 2026Updated last week
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- Evaluate variant calls and its combination with k-mer multiplicity☆69Dec 2, 2022Updated 3 years ago
- A genomic k-mer counter (and sequence utility) with nice features.☆169Jun 3, 2026Updated last month
- Tools for fast and flexible genome assembly scaffolding and improvement☆567Feb 14, 2024Updated 2 years ago
- A genome completeness evaluation tool based on miniprot☆248Jun 20, 2026Updated 2 weeks ago
- k-mer based assembly evaluation☆346May 21, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆788May 31, 2026Updated last month
- Unzip assembly graphs with Hi-C data and/or long reads.☆28May 7, 2026Updated last month
- haplotypic duplication identification tool☆289Oct 30, 2025Updated 8 months ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆212Nov 18, 2022Updated 3 years ago
- FastOMA is a scalable software package to infer orthology relationship.☆99May 15, 2026Updated last month
- ☆26Mar 23, 2024Updated 2 years ago
- Pilon is an automated genome assembly improvement and variant detection tool☆382Apr 10, 2022Updated 4 years ago