MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes
☆142Nov 6, 2024Updated last year
Alternatives and similar repositories for MitoZ
Users that are interested in MitoZ are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MITObim - mitochondrial baiting and iterative mapping☆115Dec 29, 2020Updated 5 years ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆114Sep 2, 2025Updated 7 months ago
- MitoDNA extending assembler from NGS data☆23Mar 19, 2026Updated last month
- Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)☆378Feb 13, 2025Updated last year
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆198Feb 4, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Find, circularise and annotate mitogenome from PacBio assemblies☆194May 11, 2025Updated 11 months ago
- issues for semina "Data Visulization"☆13Dec 23, 2025Updated 3 months ago
- Plastid Genome Annotator☆54Oct 29, 2020Updated 5 years ago
- PhyloSuite is an integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogeneti…☆172Feb 16, 2026Updated 2 months ago
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆40May 21, 2020Updated 5 years ago
- Scripts used in the annotation of B10K genomes☆15Jun 1, 2020Updated 5 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆37Jun 6, 2022Updated 3 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Dec 6, 2018Updated 7 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Mar 5, 2018Updated 8 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Gap2Seq is a gap filling and insertion genotyping tool.☆22Aug 12, 2024Updated last year
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆210Nov 18, 2022Updated 3 years ago
- Custom scripts for monotreme genome project☆19Jan 12, 2021Updated 5 years ago
- Fast genome analysis from unassembled short reads☆318Apr 8, 2024Updated 2 years ago
- TGS scaffolding☆47Nov 19, 2021Updated 4 years ago
- ☆16Jan 5, 2018Updated 8 years ago
- SMC++ infers population history from whole-genome sequence data.☆173Jan 20, 2024Updated 2 years ago
- A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)☆64Sep 5, 2019Updated 6 years ago
- Haplotype aware de novo assembly of diploid genome from long reads☆54Mar 16, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- k-mer based assembly evaluation☆340Jun 28, 2024Updated last year
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Mar 17, 2016Updated 10 years ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆212Aug 21, 2024Updated last year
- Version 5 of the CAFE phylogenetics software☆165Mar 16, 2026Updated last month
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆41Dec 11, 2018Updated 7 years ago
- a fork of the gap-closing pipeline PBJelly☆15Jan 7, 2019Updated 7 years ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆456Apr 12, 2026Updated last week
- A program for assessing the T2T genome continuity☆95Feb 28, 2026Updated last month
- haplotypic duplication identification tool☆280Oct 30, 2025Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- TSEBRA: Transcript Selector for BRAKER☆49Apr 7, 2026Updated last week
- use paired-end transcriptome reads to scaffold genomes☆11May 30, 2019Updated 6 years ago
- A genome assembly assessment pipeline.☆38Nov 20, 2023Updated 2 years ago
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆205Nov 23, 2025Updated 4 months ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Feb 28, 2017Updated 9 years ago
- Mapping pipeline for data generated using Arima-HiC☆84May 22, 2024Updated last year
- A fork of exonerate: a generic tool for sequence alignment☆71Nov 30, 2023Updated 2 years ago