linzhi2013 / MitoZView external linksLinks
MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes
☆135Nov 6, 2024Updated last year
Alternatives and similar repositories for MitoZ
Users that are interested in MitoZ are comparing it to the libraries listed below
Sorting:
- MITObim - mitochondrial baiting and iterative mapping☆114Dec 29, 2020Updated 5 years ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆112Sep 2, 2025Updated 5 months ago
- Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)☆369Feb 13, 2025Updated last year
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆195Feb 4, 2024Updated 2 years ago
- MitoDNA extending assembler from NGS data☆22Aug 21, 2025Updated 5 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆191May 11, 2025Updated 9 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆36Jun 6, 2022Updated 3 years ago
- A program for assessing the T2T genome continuity☆92Dec 14, 2025Updated 2 months ago
- Haplotype aware de novo assembly of diploid genome from long reads☆54Mar 16, 2022Updated 3 years ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆207Nov 18, 2022Updated 3 years ago
- Fast genome analysis from unassembled short reads☆309Apr 8, 2024Updated last year
- PhyloSuite is an integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogeneti…☆166Nov 27, 2025Updated 2 months ago
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 2 years ago
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆40May 21, 2020Updated 5 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Dec 6, 2018Updated 7 years ago
- k-mer based assembly evaluation☆338Jun 28, 2024Updated last year
- Gap2Seq is a gap filling and insertion genotyping tool.☆22Aug 12, 2024Updated last year
- Plastid Genome Annotator☆54Oct 29, 2020Updated 5 years ago
- SMC++ infers population history from whole-genome sequence data.☆172Jan 20, 2024Updated 2 years ago
- Scripts used in the annotation of B10K genomes☆15Jun 1, 2020Updated 5 years ago
- ☆16Jan 5, 2018Updated 8 years ago
- TGS scaffolding☆47Nov 19, 2021Updated 4 years ago
- Mapping pipeline for data generated using Arima-HiC☆81May 22, 2024Updated last year
- Version 5 of the CAFE phylogenetics software☆159Feb 12, 2025Updated last year
- Tools for improving the sensitivity and specificity of genome alignments☆58Jan 17, 2024Updated 2 years ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆16Jan 12, 2026Updated last month
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆445Oct 20, 2025Updated 3 months ago
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆53Dec 10, 2025Updated 2 months ago
- A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)☆63Sep 5, 2019Updated 6 years ago
- Any Way to Show Multi genomic Synteny☆217Jul 4, 2025Updated 7 months ago
- haplotypic duplication identification tool☆275Oct 30, 2025Updated 3 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Mar 5, 2018Updated 7 years ago
- FastK based version of Merqury☆30Jan 19, 2026Updated 3 weeks ago
- Custom scripts for monotreme genome project☆19Jan 12, 2021Updated 5 years ago
- A fork of exonerate: a generic tool for sequence alignment☆71Nov 30, 2023Updated 2 years ago
- Simple tools for working with Hi-C data☆18Dec 19, 2018Updated 7 years ago
- Identify and find telomeres, or telomeric repeats in a genome.☆158Nov 24, 2025Updated 2 months ago
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆203Nov 23, 2025Updated 2 months ago