ndierckx / NOVOPlastyLinks
NOVOPlasty - The organelle assembler and heteroplasmy caller
☆193Updated last year
Alternatives and similar repositories for NOVOPlasty
Users that are interested in NOVOPlasty are comparing it to the libraries listed below
Sorting:
- Generate an interactive dot plot from mummer or minimap alignments☆210Updated last year
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆177Updated last year
- De-Novo Repeat Discovery Tool☆229Updated 4 months ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆215Updated 5 months ago
- Any Way to Show Multi genomic Synteny☆214Updated 5 months ago
- Fast and accurately polish the genome generated by long reads.☆238Updated 11 months ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆207Updated 3 years ago
- Filtering and trimming of long read sequencing data☆210Updated 2 years ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆287Updated last week
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆132Updated last year
- haplotypic duplication identification tool☆270Updated last month
- ☆226Updated 10 months ago
- PASA software☆197Updated 10 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Updated last year
- k-mer based assembly evaluation☆333Updated last year
- 3D de novo assembly (3D DNA) pipeline☆220Updated 2 years ago
- Version 5 of the CAFE phylogenetics software☆155Updated 10 months ago
- ☆222Updated last week
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆118Updated 4 years ago
- A tool to circularize genome assemblies☆249Updated last year
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆174Updated 4 years ago
- Tool to plot synteny and structural rearrangements between genomes☆333Updated 8 months ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆225Updated last year
- Nanopore data assembler☆162Updated 3 years ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆374Updated last week
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆177Updated 2 years ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆208Updated last year
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆246Updated this week
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆182Updated 2 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆189Updated 7 months ago