cjneely10 / MetaSanity
Pipeline for major biological analyses.
☆34Updated 3 years ago
Alternatives and similar repositories for MetaSanity:
Users that are interested in MetaSanity are comparing it to the libraries listed below
- A workflow and scripts for large-scale antiSMASH analyses☆39Updated last week
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 2 weeks ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆32Updated last year
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆41Updated 3 months ago
- ☆45Updated last year
- PHANOTATE: a tool to annotate phage genomes.☆73Updated 4 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆58Updated this week
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆47Updated 2 months ago
- ☆69Updated last month
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- a python package for automated generation of phylogenetic trees from genbank files☆21Updated last month
- A toolkit for prokaryotic comparative genomics☆47Updated 2 months ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- ☆29Updated 3 weeks ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated this week
- BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…☆34Updated 6 years ago
- Unified Human Gut Virome Catalog☆28Updated 8 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆39Updated 6 months ago
- BEAV: Bacterial Element Annotation reVamped☆64Updated 5 months ago
- ☆27Updated 3 months ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32Updated 4 years ago
- MacSyFinder models allowing for a systematic search of anti-phage systems☆22Updated 2 months ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆38Updated 5 months ago
- ☆29Updated last month
- Prophage Activity Estimator☆26Updated 10 months ago
- ☆38Updated this week
- ☆37Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆33Updated 3 years ago
- Protocol for finding informative protein families and then using them to score omic samples☆18Updated 2 years ago
- ☆15Updated last year