Alternatives and similar repositories for Deepurify

Users that are interested in Deepurify are comparing it to the libraries listed below

• RasmussenLab / phamb
  Downstream processing of VAMB binning for Viral Elucidation
  ☆50Updated last year
• ziyewang / COMEBin
  ☆61Updated last year
• michaelkyu / PlasX
  PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture
  ☆38Updated 3 years ago
• AnantharamanLab / PropagAtE
  Prophage Activity Estimator
  ☆28Updated last year
• ziyewang / MetaBinner
  ☆58Updated last year
• Shamir-Lab / SCAPP
  SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…
  ☆34Updated 2 years ago
• liu-congcong / MetaDecoder
  An algorithm for clustering metagenomic sequences.
  ☆39Updated 6 months ago
• cjneely10 / EukMetaSanity
  Structural and functional annotation of eukaryotic metagenome-assembled genomes
  ☆22Updated 2 years ago
• apcamargo / ictv-mmseqs2-protein-database
  ☆31Updated this week
• HIT-ImmunologyLab / DBSCAN-SWA
  ☆33Updated last year
• KIT-IBG-5 / mdmcleaner
  MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs
  ☆23Updated 2 years ago
• michaelkyu / MobMess
  ☆21Updated 3 years ago
• Orin-beep / HOTSPOT
  HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.
  ☆10Updated last year
• DrKaiyangZheng / VITAP
  The viral taxonomic assignment pipeline
  ☆28Updated 7 months ago
• snayfach / MAGpurify
  Improvement of metagenome-assembled genomes
  ☆54Updated 5 years ago
• metagentools / metagenomic_binning_review
  Code used to analyse and plot metadata of metagenomic binning tools
  ☆14Updated last year
• SegataLab / cmseq
  Set of utilities on sequences and BAM files
  ☆26Updated 3 years ago
• AlexanderLabWHOI / EUKulele
  Automatic eukaryotic taxonomic classification
  ☆28Updated 5 months ago
• Matteopaluh / KEMET
  KEGG Module Evaluation Tool
  ☆31Updated last year
• endixk / ezaai
  EzAAI - High Throughput Prokaryotic AAI Calculator
  ☆44Updated 2 months ago
• allind / EukDetect
  ☆53Updated 3 months ago
• ikmb / MAGScoT
  MAGScoT - a MAG scoring and refinement tool
  ☆37Updated last year
• danielpodlesny / samestr
  SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.
  ☆23Updated this week
• Kalan-Lab / zol
  zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
  ☆63Updated last week
• gatech-genemark / MetaGeneMark-2
  MetaGeneMark-2: Improved Gene Prediction in Metagenomes
  ☆22Updated last year
• HubertTang / PLASMe
  ☆29Updated last year
• microbial-pangenomes-lab / microGWAS
  Bacterial GWAS analysis
  ☆44Updated 2 months ago
• apcamargo / magpurify2
  Identify and remove contaminants from metagenome-assembled genomes
  ☆18Updated last year
• RogerLab / Eukfinder
  Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data
  ☆27Updated 5 months ago
• mtisza1 / Cenote-Taker3
  Discover and annotate the virome
  ☆53Updated this week