zoubohao / DeepurifyLinks
Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.
☆23Updated 8 months ago
Alternatives and similar repositories for Deepurify
Users that are interested in Deepurify are comparing it to the libraries listed below
Sorting:
- ☆66Updated last year
- ☆63Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆40Updated 4 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆54Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆36Updated 2 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- MAGScoT - a MAG scoring and refinement tool☆42Updated last year
- Prophage Activity Estimator☆31Updated last year
- Set of utilities on sequences and BAM files☆27Updated 4 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- KEGG Module Evaluation Tool☆32Updated 2 years ago
- ☆34Updated 2 years ago
- An algorithm for clustering metagenomic sequences.☆41Updated 2 months ago
- HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.☆10Updated last year
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆23Updated 2 years ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆68Updated last year
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆28Updated 3 weeks ago
- ☆56Updated last week
- The viral taxonomic assignment pipeline☆42Updated last week
- ☆14Updated 4 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- ☆34Updated 4 months ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆25Updated 6 months ago
- Code used to analyse and plot metadata of metagenomic binning tools☆14Updated last year
- A tool for distinguish temperate phage-derived and virulent phage-derived sequence in metavirome data using deep learning☆26Updated 2 years ago
- The binning tool with dynamic contrastive learning and deep language model☆21Updated 2 months ago
- More scalable dereplication for metagenome assembled genomes☆76Updated last month
- ☆22Updated 4 years ago
- Population genomics from metagenomes☆12Updated last year
- Protocol for finding informative protein families and then using them to score omic samples☆18Updated 3 years ago