zoubohao / DeepurifyLinks
Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.
☆21Updated 3 months ago
Alternatives and similar repositories for Deepurify
Users that are interested in Deepurify are comparing it to the libraries listed below
Sorting:
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆37Updated 3 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated last year
- ☆60Updated last year
- Prophage Activity Estimator☆26Updated last year
- ☆57Updated last year
- An algorithm for clustering metagenomic sequences.☆37Updated 5 months ago
- Improvement of metagenome-assembled genomes☆53Updated 5 years ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆23Updated 2 years ago
- KEGG Module Evaluation Tool☆31Updated last year
- ☆27Updated last year
- ☆33Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated last month
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆27Updated 4 months ago
- The viral taxonomic assignment pipeline☆27Updated 6 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- ☆31Updated 7 months ago
- ☆21Updated 3 years ago
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆15Updated 3 years ago
- Hydrocarbon biodegradation gene annotation☆18Updated 3 years ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆65Updated 11 months ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- A workflow and scripts for large-scale antiSMASH analyses☆42Updated 5 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- ☆53Updated 2 months ago
- ☆20Updated last year
- Predict prokaryotic host for phage metagenomic sequences☆51Updated last year
- Unified Human Gut Virome Catalog☆36Updated last week
- ☆35Updated last year
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆75Updated 2 months ago
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆36Updated 6 months ago