zoubohao / DeepurifyLinks
Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.
☆23Updated 7 months ago
Alternatives and similar repositories for Deepurify
Users that are interested in Deepurify are comparing it to the libraries listed below
Sorting:
- ☆66Updated last year
- ☆62Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆54Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆40Updated 3 years ago
- The viral taxonomic assignment pipeline☆42Updated last month
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆35Updated 2 years ago
- ☆34Updated 2 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆46Updated 6 months ago
- An algorithm for clustering metagenomic sequences.☆41Updated last month
- Prophage Activity Estimator☆30Updated last year
- HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.☆10Updated last year
- KEGG Module Evaluation Tool☆32Updated 2 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- ☆33Updated 3 months ago
- MAGScoT - a MAG scoring and refinement tool☆42Updated last year
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆23Updated 2 years ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆68Updated last year
- Set of utilities on sequences and BAM files☆26Updated 4 years ago
- ☆56Updated 6 months ago
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆24Updated 2 months ago
- ☆22Updated 3 years ago
- Unified Human Gut Virome Catalog☆41Updated 2 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- Identify and remove contaminants from metagenome-assembled genomes☆18Updated last year
- ☆32Updated last year
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Updated 2 years ago
- More scalable dereplication for metagenome assembled genomes☆75Updated last month
- ☆26Updated 2 years ago
- Predict prokaryotic host for phage metagenomic sequences☆53Updated last year