This is the repository for DeepHost, a phage host prediction tool.
☆20Dec 12, 2024Updated last year
Alternatives and similar repositories for DeepHost
Users that are interested in DeepHost are comparing it to the libraries listed below
Sorting:
- Code and database related to our manuscript "Predicting bacteriophage hosts based on receptor-binding proteins"☆13Nov 2, 2023Updated 2 years ago
- Host prediction for phages☆26Nov 6, 2024Updated last year
- Predict prokaryotic hosts for phage (meta) genomic sequences☆11Apr 4, 2022Updated 3 years ago
- PhaTYP: Predicting lifestyle for bacteriophages using BERT☆15Nov 6, 2024Updated last year
- Phage-Host Interaction Search Tool☆29Jul 8, 2024Updated last year
- ☆17Mar 18, 2023Updated 2 years ago
- Pairwise machine learning models for phage-host interaction prediction☆20Jun 23, 2024Updated last year
- This is a python package for genomics study with a GCN framework.☆44Dec 12, 2024Updated last year
- Detection of phage RBPs based on protein domains and machine learning☆30Feb 5, 2025Updated last year
- A comprehensive pipeline for short read metagenomic data☆24Aug 25, 2020Updated 5 years ago
- GCN classifier for phage taxanomy classification☆31Nov 6, 2024Updated last year
- ☆32Oct 18, 2024Updated last year
- ☆26Dec 5, 2022Updated 3 years ago
- NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks☆11Dec 3, 2023Updated 2 years ago
- Documentation and tutorials worth sharing.☆10Dec 7, 2022Updated 3 years ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Dec 20, 2024Updated last year
- Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples☆34Apr 4, 2025Updated 10 months ago
- A Network Integration Approach for Drug-Target Interaction Prediction☆13Apr 5, 2025Updated 10 months ago
- ☆10Mar 29, 2025Updated 11 months ago
- ☆10Feb 18, 2018Updated 8 years ago
- ☆14Feb 5, 2025Updated last year
- ☆11Mar 23, 2024Updated last year
- Exploring Robustness of Unsupervised Domain Adaptation in Semantic Segmentation (ICCV 2021; Oral)☆12Oct 9, 2022Updated 3 years ago
- Datastores for reads, not your papa's FASTQ files.☆11Jul 28, 2023Updated 2 years ago
- ☆11Aug 12, 2022Updated 3 years ago
- ☆13Nov 11, 2023Updated 2 years ago
- Front-end code for Serratus project website☆12Jul 2, 2024Updated last year
- ☆13Apr 5, 2024Updated last year
- ☆10Updated this week
- Fake genomes, fake sequencing, real insights.☆13Sep 4, 2021Updated 4 years ago
- ☆14Jun 17, 2023Updated 2 years ago
- Code for "Automated Detection of Alzheimer’s Disease: A Multi-modal Approach With 3D MRI and Amyloid PET" paper☆14Jan 18, 2025Updated last year
- Bloom filters in Julia☆18Jul 11, 2019Updated 6 years ago
- [deprecated] P-value adjustment methods for multiple testing correction☆16Nov 25, 2016Updated 9 years ago
- Official Pytorch implementation of TargetNet, Bioinformatics 2022☆14Apr 9, 2022Updated 3 years ago
- Biologically RElevant VIrtual Staining☆12Dec 10, 2021Updated 4 years ago
- A pipeline to identify gene family using mutiple tools and scripts.☆11Aug 22, 2021Updated 4 years ago
- HealthBench☆15Sep 15, 2025Updated 5 months ago
- MetaCC allows scalable and integrative analyses of both long-read and short-read metagenomic Hi-C data☆11Mar 8, 2025Updated 11 months ago