deepomicslab / DeepHostLinks
This is the repository for DeepHost, a phage host prediction tool.
☆20Updated 7 months ago
Alternatives and similar repositories for DeepHost
Users that are interested in DeepHost are comparing it to the libraries listed below
Sorting:
- Code and database related to our manuscript "Predicting bacteriophage hosts based on receptor-binding proteins"☆13Updated last year
- ☆26Updated 10 months ago
- Pairwise machine learning models for phage-host interaction prediction☆17Updated last year
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆102Updated last year
- Detection of phage RBPs based on protein domains and machine learning☆24Updated 5 months ago
- Host prediction for phages☆25Updated 8 months ago
- GCN classifier for phage taxanomy classification☆31Updated 8 months ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆82Updated 8 months ago
- Deep representation learning for disease prediction based on microbiome data☆59Updated 2 years ago
- Similarity networks of biosynthetic gene clusters☆120Updated 2 weeks ago
- MGnify genome analysis pipeline☆108Updated this week
- Machine-learning-based general bacterial promoter prediction tool.☆49Updated 2 years ago
- PhaTYP: Predicting lifestyle for bacteriophages using BERT☆13Updated 8 months ago
- ☆15Updated 2 years ago
- sensitive and precise assembly of short sequencing reads☆157Updated 9 months ago
- RNA secondary structure/sequence profiles for homology search and alignment☆112Updated 8 months ago
- Variational autoencoder for metagenomic binning☆295Updated last month
- Published in PLOS ONE. Phage-host interaction prediction tool that uses protein language models to represent the receptor-binding protein…☆15Updated 2 weeks ago
- ☆83Updated 2 years ago
- Deep learning for Metagenome Assembly Error Detection☆26Updated 4 years ago
- Python package to study microbial communities using metabolic modeling.☆104Updated last month
- Fast and flexible ORF finder☆73Updated 3 years ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆144Updated 3 weeks ago
- ☆16Updated this week
- Systematic search of all known anti-phage systems.☆110Updated last month
- VIDHOP is a virus host predicting tool. Its able to predict influenza A virus, rabies lyssavirus and rotavirus A.☆23Updated 2 years ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆67Updated 3 months ago
- Logan Unitigs and Contigs☆141Updated last week
- Local version of the virus identification and analysis web server (tool set)☆67Updated 2 weeks ago
- Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA☆18Updated 8 months ago