Alternatives and similar repositories for resmico:

Users that are interested in resmico are comparing it to the libraries listed below

• statdivlab / happi
  A Hierarchical Approach to Pangenomics Inference
  ☆11Updated last year
• mdsufz / OrtSuite
  Prediction of microbial interactions in complex communities
  ☆12Updated 8 months ago
• lmlui / Jorg
  MAG Circularization Method
  ☆33Updated 2 years ago
• qiyunlab / binarena
  BinaRena: Interactive Visualization and Binning of Metagenomic Contigs
  ☆32Updated 7 months ago
• KIT-IBG-5 / mdmcleaner
  MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs
  ☆24Updated 2 years ago
• apcamargo / magpurify2
  Identify and remove contaminants from metagenome-assembled genomes
  ☆18Updated last year
• moritzbuck / mOTUlizer
  Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin
  ☆14Updated 6 months ago
• alexmsalmeida / metamap
  Snakemake workflow to map and quantify microbial genomes in metagenomic reads
  ☆12Updated last year
• AlexanderLabWHOI / EukHeist
  ☆25Updated last year
• ikmb / MAGScoT
  MAGScoT - a MAG scoring and refinement tool
  ☆34Updated 6 months ago
• bacpop / CELEBRIMBOR
  Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs
  ☆23Updated 8 months ago
• nick-youngblut / traitar3
  From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)
  ☆22Updated 9 months ago
• aweimann / traitar
  ☆22Updated 2 years ago
• metagentools / metagenomic_binning_review
  Code used to analyse and plot metadata of metagenomic binning tools
  ☆14Updated 7 months ago
• josephpetrone / RESCUE
  Resolving Species Level Classification Using Emu
  ☆12Updated 10 months ago
• wbazant / CORRAL
  ☆13Updated last year
• hoelzer-lab / ribap
  A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs
  ☆27Updated 5 months ago
• metasnv-tool / metaSNV
  MetaSNV, a metagenomic SNV calling pipeline.
  ☆20Updated 3 years ago
• leaemiliepradier / PlasForest
  A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes
  ☆18Updated 2 years ago
• Chartiza / Microbiome
  scripts for microbiome analysis
  ☆11Updated 8 months ago
• dgittins / CANT-HYD-HydrocarbonBiodegradation
  Hydrocarbon biodegradation gene annotation
  ☆15Updated 2 years ago
• leylabmpi / SynTracker
  SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…
  ☆27Updated 2 months ago
• elizabethmcd / metabolisHMM
  Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs
  ☆18Updated 3 years ago
• zheminzhou / SPARSE
  Strain Prediction and Analysis with Representative SEquence
  ☆18Updated 4 months ago
• EnvGen / POGENOM
  Population genomics from metagenomes
  ☆11Updated 7 months ago
• xinehc / melon
  Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes
  ☆34Updated 2 months ago
• danielpodlesny / samestr
  SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.
  ☆18Updated 2 weeks ago
• gcremers / metascan
  Metabolic scanning and annotation of Metagenomes
  ☆10Updated last month
• timghaly / EcoFoldDB
  Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.
  ☆11Updated 2 weeks ago
• MrOlm / tRep
  Quickly get the taxonomy of a genome
  ☆10Updated last year