JamieHeather / stitchrLinks
Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info
☆57Updated last month
Alternatives and similar repositories for stitchr
Users that are interested in stitchr are comparing it to the libraries listed below
Sorting:
- flexible CDR based distance metrics☆66Updated 11 months ago
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆57Updated 3 years ago
- ☆40Updated 4 years ago
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆95Updated 4 years ago
- CDR3 clustering module providing a new method for fast and accurate clustering of large data sets of CDR3 amino acid sequences, and offer…☆54Updated last year
- Code and data used in The Great Repertoire Project☆30Updated 4 years ago
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆85Updated 3 years ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 2 years ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆68Updated last week
- Deep Learning Method to Identify Cancer Associated TCRs☆47Updated 3 years ago
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…☆30Updated 2 years ago
- bioinformatics plotting and tools☆59Updated last year
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆35Updated 3 years ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆42Updated last week
- ☆48Updated 3 years ago
- Ultrafast TCR clustering algorithm based on geometric isometry☆68Updated 9 months ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆51Updated 2 months ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆77Updated last year
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- Code related to the Celligner manuscript☆46Updated 4 years ago
- ☆64Updated last year
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆33Updated 3 years ago
- ☆38Updated last year
- ☆11Updated 5 years ago
- Inference of TCR motifs☆32Updated last month
- Molecular interactions inference from single-cell multi-omics data☆27Updated 2 months ago
- predicting peptide and TCR interaction☆20Updated 4 years ago
- ☆31Updated 6 months ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆28Updated 3 months ago
- ☆29Updated last month