Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2021)
☆30Jul 12, 2025Updated 7 months ago
Alternatives and similar repositories for TITAN
Users that are interested in TITAN are comparing it to the libraries listed below
Sorting:
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆19Aug 26, 2020Updated 5 years ago
- Generic TCR-epitope recognition prediction using CNN approach on both known and novel epitopes☆17May 22, 2023Updated 2 years ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆36Mar 29, 2022Updated 3 years ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆34Apr 1, 2022Updated 3 years ago
- Large language modeling applied to T-cell receptor (TCR) sequences.☆59May 4, 2022Updated 3 years ago
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…☆30Jan 31, 2023Updated 3 years ago
- ☆17Jun 24, 2021Updated 4 years ago
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆90Jun 14, 2022Updated 3 years ago
- ☆22Oct 4, 2022Updated 3 years ago
- python tools for TCR:peptide-MHC modeling and analysis☆88Apr 12, 2024Updated last year
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆123Sep 16, 2025Updated 5 months ago
- ☆41Aug 18, 2020Updated 5 years ago
- ☆48Mar 26, 2025Updated 11 months ago
- flexible CDR based distance metrics☆71Dec 16, 2025Updated 2 months ago
- ☆14Oct 16, 2025Updated 4 months ago
- Quantifiable predictive features define epitope-specific T cell receptor repertoires☆13Dec 8, 2022Updated 3 years ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆26Oct 18, 2022Updated 3 years ago
- 🗂️ [vdjdb.com is up and running!] Git-based TCR database storage & management. Submissions welcome!☆152Feb 22, 2026Updated last week
- An R package for correcting p-values for multiple hypothesis testing in comparative quantitative omics experiments using permutation-base…☆12Apr 12, 2023Updated 2 years ago
- T cell Receptor and B cell Receptor assembly from single cell RNA sequencing data☆10Aug 27, 2017Updated 8 years ago
- Interactive browser for the VDJdb database☆15Updated this week
- LORIS: A LOgistic Regression-based Immunotherapy-response Score☆14Nov 18, 2024Updated last year
- Predictor of TCR-epitope interactions☆34Sep 9, 2025Updated 5 months ago
- Integrative analysis for scRNA-seq and scTCR-/scBCR-seq data☆20Feb 26, 2026Updated last week
- ☆15Nov 13, 2023Updated 2 years ago
- CDR3 clustering module providing a new method for fast and accurate clustering of large data sets of CDR3 amino acid sequences, and offer…☆54Apr 3, 2024Updated last year
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆86Oct 6, 2021Updated 4 years ago
- code repository for Lagattuta et al. "Repertoire analyses reveal T cell receptor sequence features that influence T cell fate." Nat. Imm.…☆13Jan 28, 2025Updated last year
- Cluster up to millions of peptide sequences on shared sequence motifs.☆13Oct 1, 2018Updated 7 years ago
- IMSEQ - IMmunogenetic SEQuence Analysis☆15Aug 10, 2018Updated 7 years ago
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆64Nov 18, 2025Updated 3 months ago
- ☆52Dec 3, 2023Updated 2 years ago
- Clonotype Neighbor Graph Analysis☆95Feb 12, 2026Updated 2 weeks ago
- ☆18Nov 18, 2025Updated 3 months ago
- Summary statistics for repertoires☆17Feb 1, 2023Updated 3 years ago
- ☆18Apr 20, 2025Updated 10 months ago
- Predicting immunogenic peptide recognized by TCR through ensemble deep learning☆17Apr 22, 2024Updated last year
- ☆39Apr 7, 2023Updated 2 years ago
- 📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential☆24Sep 30, 2025Updated 5 months ago