uio-bmi / compairrLinks
Comparison of Adaptive Immune Receptor Repertoires
☆28Updated 11 months ago
Alternatives and similar repositories for compairr
Users that are interested in compairr are comparing it to the libraries listed below
Sorting:
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆28Updated last year
- R package for nucleotide conversion sequencing data analysis☆16Updated 11 months ago
- DRUGZ software☆25Updated 4 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Updated 4 years ago
- PRedictor of IMmunogenic Epitopes☆25Updated 3 months ago
- ☆38Updated 2 years ago
- R tool to analyse and integrate multiple -omics data☆15Updated 2 weeks ago
- SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.☆12Updated 2 years ago
- ☆18Updated 8 months ago
- 🏺 Exploring novel tumor epitope identification☆37Updated 5 years ago
- Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads☆16Updated 2 years ago
- Code to run OncoSig Analyses☆18Updated 5 years ago
- ☆20Updated 7 months ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆41Updated 3 years ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆22Updated 2 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆20Updated 3 years ago
- ☆23Updated 3 years ago
- Network Visualization using both GUI and Programming☆29Updated 7 months ago
- Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors☆33Updated 10 months ago
- ☆15Updated 3 years ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆26Updated 3 years ago
- ☆12Updated 7 years ago
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19Updated last year
- 🐶 hlabud: HLA genotype analysis in R☆17Updated 9 months ago
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Updated 2 years ago
- Code from "Deep Learning Of The Regulatory Grammar Of Yeast 5′ Untranslated Regions From 500,000 Random Sequences"☆16Updated 8 years ago
- Bayesian enrichment estimation in R☆11Updated 2 months ago
- Predicting gene expression levels from genomic sequences☆54Updated 5 years ago
- Software for Ontogenic aNalysis of Antibody Repertoires☆19Updated 3 months ago