Comparison of Adaptive Immune Receptor Repertoires
☆31Jan 29, 2025Updated last year
Alternatives and similar repositories for compairr
Users that are interested in compairr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- TCRAFT is a a scalable and cost-effective platform for pooled assembly of synthetic TCR libraries. This software package converts a table…☆12Jul 20, 2025Updated last year
- C++ implementation of lulu, a R package for post-clustering curation of metabarcoding data☆11Aug 1, 2026Updated 3 months ago
- Immunoglobulin and T-Cell receptor rearrangement software☆52Jan 9, 2026Updated 9 months ago
- B-cell repertoire and clonal family tree explorer☆18Oct 26, 2026Updated last week
- Decombinator: fast, error-correcting analysis of TCR repertoires☆28May 18, 2026Updated 5 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Vaeda method for computational doublet annotation☆21Feb 1, 2026Updated 9 months ago
- flexible CDR based distance metrics☆76Dec 16, 2025Updated 10 months ago
- ☆11Oct 29, 2025Updated last year
- TCR and BCR assembly from RNA-seq data☆367Sep 25, 2026Updated last month
- Detecting TCR involved in immune responses from single RepSeq datasets☆28Jun 17, 2019Updated 7 years ago
- CellAnn☆12Nov 3, 2023Updated 3 years ago
- IgGM adaptation for easy use in Google Colab☆12Aug 10, 2025Updated last year
- Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads☆16Dec 5, 2023Updated 2 years ago
- IgSimulator is a versatile tool for simulation of immunoglobulin repertoire☆12Nov 25, 2016Updated 9 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- R Shiny tool to interactively visualize and analyze antibody repertoires☆11Jan 8, 2024Updated 2 years ago
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆71Mar 12, 2026Updated 7 months ago
- Using TCR and expression for sequence embedding☆64Jan 6, 2026Updated 9 months ago
- Code and data used in The Great Repertoire Project☆30Jun 14, 2021Updated 5 years ago
- ☆19Apr 20, 2025Updated last year
- Single-cell immune repertoire trajectory analysis in R☆12Aug 8, 2025Updated last year
- An open source version of EVQLV's HyperBindAI, a contrastive learning model for Ab-Ag interactivity.☆12Jun 11, 2025Updated last year
- Intelligent and cost-effective bidding on cloud computing instances for bioinformatics pipelines.☆13Dec 8, 2017Updated 8 years ago
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆242Feb 12, 2026Updated 8 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆71Nov 18, 2025Updated 11 months ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆76Updated this week
- TRUST4 manuscript evaluation☆17Jul 8, 2022Updated 4 years ago
- 🐶 hlabud: HLA genotype analysis in R☆19Apr 11, 2025Updated last year
- yaha: a flexible, sensitive and accurate DNA alignment tool designed to find optimal split-read mappings on single-end queries from 100bp…☆20Dec 6, 2017Updated 8 years ago
- Git-based antigen specificity database storage & management.☆157Updated this week
- AI model and framework for scoring antibody-antigen complexes☆30Jul 29, 2026Updated 3 months ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆165Aug 20, 2024Updated 2 years ago
- likelihood calculations over a tree to support ancient DNA Y chr analysis and more☆11Jul 4, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Codes used in LISTA project.☆14Apr 17, 2024Updated 2 years ago
- ☆15Sep 16, 2026Updated last month
- Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets☆13Sep 20, 2022Updated 4 years ago
- Sketch phylogenetic trees and networks☆26Sep 30, 2026Updated last month
- ☆10May 17, 2021Updated 5 years ago
- Temporal Development of the Gut Microbiome in Early Childhood - The TEDDY Study☆11Jul 13, 2018Updated 8 years ago
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated last year