Alternatives and similar repositories for compairr

Users that are interested in compairr are comparing it to the libraries listed below

• Xinglab / IRIS
  IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening
  ☆27Updated last year
• GreiffLab / immuneSIM
  ☆38Updated 2 years ago
• erhard-lab / grandR
  R package for nucleotide conversion sequencing data analysis
  ☆16Updated 9 months ago
• Seeliglab / 2017---Deep-learning-yeast-UTRs
  Code from "Deep Learning Of The Regulatory Grammar Of Yeast 5′ Untranslated Regions From 500,000 Random Sequences"
  ☆16Updated 8 years ago
• uclahs-cds / package-moPepGen
  Multi-Omics Peptide Generator
  ☆29Updated last month
• GfellerLab / PRIME
  PRedictor of IMmunogenic Epitopes
  ☆25Updated 2 months ago
• dwgoon / nezzle
  Network Visualization using both GUI and Programming
  ☆29Updated 6 months ago
• pachterlab / qcbc
  ☆20Updated 6 months ago
• nf-core / diaproteomics
  Automated quantitative analysis of DIA proteomics mass spectrometry measurements.
  ☆20Updated 10 months ago
• vrmelo / SPLICE-q
  SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.
  ☆12Updated 2 years ago
• kundajelab / coessentiality
  Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
  ☆27Updated 3 years ago
• nf-core / mhcquant
  Identify and quantify MHC eluted peptides from mass spectrometry raw data
  ☆41Updated 2 weeks ago
• hart-lab / drugz
  DRUGZ software
  ☆25Updated 4 years ago
• scharch / SONAR
  Software for Ontogenic aNalysis of Antibody Repertoires
  ☆19Updated 2 months ago
• athchen / beer
  Bayesian enrichment estimation in R
  ☆11Updated 3 weeks ago
• IxI-97 / BiomiX
  R tool to analyse and integrate multiple -omics data
  ☆15Updated 6 months ago
• XSLiuLab / Seq2Neo
  Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction
  ☆22Updated 2 years ago
• rraadd88 / beditor
  A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more
  ☆19Updated last year
• slowkow / hlabud
  🐶 hlabud: HLA genotype analysis in R
  ☆17Updated 7 months ago
• 10XGenomics / enclone
  VDJ Clonotyping & Analysis Tools
  ☆50Updated 9 months ago
• pdxgx / neoepiscope
  predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data
  ☆27Updated 2 years ago
• bassanilab / NeoDisc
  NeoDisc - A computational pipeline for the identification and prioritization of immunogenic tumor-specific HLA-I and -II antigens from ge…
  ☆13Updated last year
• djhn75 / RNAEditor
  ☆15Updated 3 years ago
• kuanrongchan / STAGES
  ☆36Updated 9 months ago
• goodarzilab / SwitchFinder
  ☆18Updated last year
• TRON-Bioinformatics / neofox
  Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors
  ☆33Updated 8 months ago
• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆40Updated 3 years ago
• MaayanLab / maayanlab-bioinformatics
  A collection of useful functions for bioinformatics data analysis
  ☆24Updated 4 months ago
• IEDB / TCRMatch
  ☆31Updated 5 months ago
• interactivereport / xOmicsShiny
  xOmicsShiny: an R Shiny application for cross-omics data analysis and pathway mapping, Bioinformatics Advances, Volume 5, Issue 1, 2025, …
  ☆34Updated 3 weeks ago