Alternatives and similar repositories for compairr

Users that are interested in compairr are comparing it to the libraries listed below

• GfellerLab / PRIME
  PRedictor of IMmunogenic Epitopes
  ☆24Updated last month
• XSLiuLab / Seq2Neo
  Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction
  ☆21Updated 2 years ago
• GreiffLab / immuneSIM
  ☆38Updated last year
• erhard-lab / grandR
  R package for nucleotide conversion sequencing data analysis
  ☆15Updated 8 months ago
• pdxgx / neoepiscope
  predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data
  ☆27Updated 2 years ago
• dwgoon / nezzle
  Network Visualization using both GUI and Programming
  ☆29Updated 5 months ago
• goodarzilab / SwitchFinder
  ☆18Updated last year
• vrmelo / SPLICE-q
  SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.
  ☆12Updated 2 years ago
• emmijokinen / TCRconv
  TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…
  ☆25Updated 3 years ago
• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆39Updated 3 years ago
• kundajelab / coessentiality
  Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
  ☆27Updated 3 years ago
• hart-lab / drugz
  DRUGZ software
  ☆24Updated 4 years ago
• uclahs-cds / package-moPepGen
  Multi-Omics Peptide Generator
  ☆28Updated this week
• Xinglab / IRIS
  IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening
  ☆26Updated last year
• statbiophys / HLAGuessr
  ☆18Updated 6 months ago
• Seeliglab / 2017---Deep-learning-yeast-UTRs
  Code from "Deep Learning Of The Regulatory Grammar Of Yeast 5′ Untranslated Regions From 500,000 Random Sequences"
  ☆15Updated 8 years ago
• IEDB / TCRMatch
  ☆30Updated 4 months ago
• vagarwal87 / Xpresso
  Predicting gene expression levels from genomic sequences
  ☆54Updated 5 years ago
• ggdna / seqwalk
  Efficient algorithms for designing orthogonal DNA sequence libraries
  ☆13Updated last year
• kmayerb / tcrdist3
  flexible CDR based distance metrics
  ☆67Updated last year
• tianshilu / QBRC-Neoantigen-Pipeline
  QBRC Neoantigen calling pipeline with CSiN calculation embedded
  ☆24Updated 3 years ago
• kuijjerlab / retriever
  Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data
  ☆15Updated 3 years ago
• pachterlab / qcbc
  ☆20Updated 5 months ago
• rraadd88 / beditor
  A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more
  ☆19Updated last year
• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 3 years ago
• 10XGenomics / enclone
  VDJ Clonotyping & Analysis Tools
  ☆49Updated 7 months ago
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆37Updated this week
• nf-core / mhcquant
  Identify and quantify MHC eluted peptides from mass spectrometry raw data
  ☆39Updated this week
• maxwellsh / DIGDriver
  Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.
  ☆26Updated 3 years ago
• IxI-97 / BiomiX
  R tool to analyse and integrate multiple -omics data
  ☆14Updated 4 months ago