slowkow / hlabudLinks
πΆ hlabud: HLA genotype analysis in R
β17Updated 5 months ago
Alternatives and similar repositories for hlabud
Users that are interested in hlabud are comparing it to the libraries listed below
Sorting:
- TFregulomeR reveals transcription factorsβ context-specific features and functionsβ16Updated 3 years ago
- π§ Navigate single-cell RNA-seq datasets in your web browser.β29Updated 2 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platformsβ18Updated 2 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seqβ31Updated 4 years ago
- ESTIMATE tumor infiltration, the tidy wayβ16Updated 2 years ago
- scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal dataβ15Updated this week
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment oβ¦β14Updated 2 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicingβ18Updated last year
- Smooth-quantile Normalization Adaptation for Inference of co-expression Linksβ16Updated 2 years ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.β20Updated 4 months ago
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"β20Updated 7 months ago
- Machine learning use cases for teachingβ13Updated 8 years ago
- Explore the cancer relevance of your gene listβ52Updated 6 months ago
- Trans-association between HLA and TCR-CDR3β18Updated 2 years ago
- R interface to megadepth: BigWig and BAM related utilitiesβ12Updated 9 months ago
- A set of tools for accurate quantitation of single-cell allele-specific expressionβ12Updated 2 years ago
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRaβ¦β27Updated 5 months ago
- Chromatin ACcessibility and Transcriptomics Unifying Softwareβ17Updated 10 months ago
- β12Updated last year
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.β19Updated 3 years ago
- tools in python and R for analyzing biological count data, especially from single cell RNAseqβ22Updated last year
- scoverβ23Updated last year
- Create a cromphensive report of DEG list coming from any analysis of RNAseq dataβ26Updated last year
- Repository for signature genes from Immune Cell Atlasβ18Updated 5 years ago
- β17Updated last year
- rbioapi: User-Friendly R Interface to Biologic Web Services' APIβ22Updated 2 months ago
- The KEGGgraph package to parse KEGG pathways in R into graph objectsβ14Updated 5 months ago
- A GenePattern module for running the ssGSEA methodβ13Updated 6 months ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization modelβ22Updated 4 years ago
- Targeted and non-targeted anticancer drugs and drug regimensβ29Updated this week