slowkow / hlabudLinks
πΆ hlabud: HLA genotype analysis in R
β16Updated 4 months ago
Alternatives and similar repositories for hlabud
Users that are interested in hlabud are comparing it to the libraries listed below
Sorting:
- TFregulomeR reveals transcription factorsβ context-specific features and functionsβ16Updated 3 years ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Linksβ16Updated 2 years ago
- R interface to megadepth: BigWig and BAM related utilitiesβ12Updated 8 months ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seqβ31Updated 4 years ago
- Trans-association between HLA and TCR-CDR3β18Updated 2 years ago
- π§ Navigate single-cell RNA-seq datasets in your web browser.β29Updated 2 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicingβ18Updated last year
- ESTIMATE tumor infiltration, the tidy wayβ16Updated 2 years ago
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRaβ¦β27Updated 4 months ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platformsβ18Updated 2 years ago
- β10Updated 6 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"β16Updated 6 years ago
- Pipeline for the identification of cancer-related mutations from RNA-seq dataβ14Updated 4 years ago
- A set of tools for accurate quantitation of single-cell allele-specific expressionβ12Updated 2 years ago
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"β20Updated 6 months ago
- Machine learning use cases for teachingβ13Updated 8 years ago
- Targeted and non-targeted anticancer drugs and drug regimensβ29Updated 3 weeks ago
- Repository for signature genes from Immune Cell Atlasβ18Updated 5 years ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.β20Updated 4 months ago
- scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal dataβ14Updated last week
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment oβ¦β14Updated 2 years ago
- Analysis tools for PhIP-seq experimentsβ12Updated 3 years ago
- A GenePattern module for running the ssGSEA methodβ13Updated 5 months ago
- rbioapi: User-Friendly R Interface to Biologic Web Services' APIβ22Updated last month
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: httβ¦β11Updated 4 months ago
- integrative pathway analysis with modern PCA methodology and gene selectionβ11Updated 2 years ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization modelβ22Updated 4 years ago
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept β¦β21Updated 4 years ago
- BioCarta pathway imagesβ11Updated last year
- Explore the cancer relevance of your gene listβ51Updated 6 months ago