🐶 hlabud: HLA genotype analysis in R
☆19Apr 11, 2025Updated last year
Alternatives and similar repositories for hlabud
Users that are interested in hlabud are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Trans-association between HLA and TCR-CDR3☆20Mar 29, 2023Updated 3 years ago
- R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…☆14Oct 8, 2026Updated 3 weeks ago
- R Shiny tool to interactively visualize and analyze antibody repertoires☆11Jan 8, 2024Updated 2 years ago
- ☆19Apr 20, 2025Updated last year
- Efficient querying of biological databases☆45Oct 27, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Code to reproduce analysis and figures for 'Genetic mapping of etiologic brain cell types for obesity' (Timshel, eLife 2020)☆14May 20, 2021Updated 5 years ago
- Immunogenetic Data Tools related to HLA, GLStrings, Linkage Disequilibrium☆12Oct 29, 2026Updated last week
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Oct 5, 2017Updated 9 years ago
- ☆12May 30, 2023Updated 3 years ago
- 📂 HLA allele frequencies in tab-delimited format, downloaded from AFND.☆28Apr 23, 2024Updated 2 years ago
- Compute the neighborhood consolidation matrix and identify SHRs☆15Jun 12, 2025Updated last year
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆57Dec 19, 2023Updated 2 years ago
- Genetic correlation calculation pipeline via summary statistics for PheWeb☆13Mar 22, 2019Updated 7 years ago
- TLimmuno2: predicting MHC class II antigen immunogenicity through transfer learning☆14Jun 19, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Spatial neighbour-aware transcript cleanup for imaging-based spatial transcriptomics data (Xenium, MERSCOPE, CosMx). XeniumClean removes…☆21Jul 19, 2026Updated 3 months ago
- SuperCell for Cytometry data☆13Oct 14, 2025Updated last year
- ☆15Updated this week
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Nov 21, 2019Updated 6 years ago
- Reproducible Workflows, curated at the Fred Hutch☆12Jan 21, 2026Updated 9 months ago
- ☆11Sep 7, 2023Updated 3 years ago
- bedpull - Pull the query sequence from bam or fasta references using a bed file☆16Sep 24, 2026Updated last month
- EvoEF + evolutionary profile for ddG_bind prediction☆15Oct 17, 2025Updated last year
- Pipeline for generating RNAseq-based cancer patient reports☆15Aug 24, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A Rust library for storing generic genomic data by sorted chromosome name☆18Sep 26, 2024Updated 2 years ago
- GRIMM: Graph IMputation and Matching for HLA Genotypes☆11May 24, 2023Updated 3 years ago
- ☆15Jul 16, 2026Updated 3 months ago
- Manage Files Across Sessions☆14Oct 30, 2026Updated last week
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Oct 31, 2019Updated 7 years ago
- MATLAB implementation of Gene Set Enrichment Analysis (GSEA) method for finding pathways which can show more complex relation between cha…☆10Sep 7, 2022Updated 4 years ago
- Library and tool for annotating MAF files using Genome Nexus Webserver API☆13Aug 11, 2026Updated 2 months ago
- How many distinct k-mers are there in a sequence?☆11Oct 26, 2026Updated last week
- RA Synovial Single-cell Multimodal Cell Atlas☆22Mar 6, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A package for the analysis of Imaging Mass Cytometry data☆17Mar 25, 2026Updated 7 months ago
- BamQuery provides RNA-seq quantification for a given peptide (from 8 to 11 residues) in chosen RNA-seq samples (single or bulk).☆13Aug 12, 2024Updated 2 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆33Jan 15, 2021Updated 5 years ago
- Cross-Attention Mechanism for Modeling the Interaction of HLA Class II Molecules with Peptides.☆12Jan 12, 2026Updated 9 months ago
- R package – HLA Genotype Imputation with Attribute Bagging (development version only)☆31Sep 17, 2026Updated last month
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated last year
- Using TCR and expression for sequence embedding☆64Jan 6, 2026Updated 10 months ago