slowkow / hlabud
🐶 hlabud: HLA genotype analysis in R
☆16Updated last month
Alternatives and similar repositories for hlabud
Users that are interested in hlabud are comparing it to the libraries listed below
Sorting:
- TFregulomeR reveals transcription factors’ context-specific features and functions☆16Updated 3 years ago
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆13Updated 2 years ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated 2 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- Trans-association between HLA and TCR-CDR3☆17Updated 2 years ago
- CellAnn☆12Updated last year
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- Chromatin ACcessibility and Transcriptomics Unifying Software☆16Updated 6 months ago
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆18Updated 3 months ago
- ☆12Updated last year
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆18Updated 3 weeks ago
- Pairwise Hierarchical Model☆17Updated 3 years ago
- integrative pathway analysis with modern PCA methodology and gene selection☆11Updated last year
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 7 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 9 months ago
- scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data☆13Updated last week
- R interface to megadepth: BigWig and BAM related utilities☆12Updated 5 months ago
- ☆14Updated 5 years ago
- The KEGGgraph package to parse KEGG pathways in R into graph objects☆13Updated last month
- HOT regions paper☆11Updated 5 years ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆21Updated 4 years ago
- Machine learning use cases for teaching☆13Updated 7 years ago
- An R package for multi-dimensional pathway enrichment analysis☆16Updated last month
- Core utilities for single-cell RNA-seq☆12Updated last month
- ☆18Updated 3 weeks ago
- ☆10Updated 6 years ago
- tools in python and R for analyzing biological count data, especially from single cell RNAseq☆22Updated last year
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Gene Expression Decomposition and Integration☆17Updated 2 months ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆24Updated 8 months ago