Git-based antigen specificity database storage & management.
☆155Jun 11, 2026Updated 2 months ago
Alternatives and similar repositories for vdjdb-db
Users that are interested in vdjdb-db are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆96Dec 4, 2020Updated 5 years ago
- Matching T-cell receptor repertoires to a database of antigen specificities☆39Jul 30, 2026Updated 2 weeks ago
- An interactive browser for the VDJdb database☆16Updated this week
- Clonotype Neighbor Graph Analysis☆100Jun 15, 2026Updated last month
- Analysis of immune repertoire sequencing results☆145Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆87Oct 6, 2021Updated 4 years ago
- MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.☆399Jul 10, 2026Updated last month
- Altered TCR Ligand Affinities and Structures☆13Dec 1, 2023Updated 2 years ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆121Sep 16, 2025Updated 10 months ago
- TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data☆136Nov 28, 2023Updated 2 years ago
- flexible CDR based distance metrics☆75Dec 16, 2025Updated 7 months ago
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆68Nov 18, 2025Updated 8 months ago
- T cell Receptor and B cell Receptor assembly from single cell RNA sequencing data☆10Aug 27, 2017Updated 8 years ago
- Generic TCR-epitope recognition prediction using CNN approach on both known and novel epitopes☆17May 22, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆243Feb 12, 2026Updated 6 months ago
- 🧬 immunarch [R package] – Multi-Modal Immune Repertoire Analytics for Immunotherapy and Vaccine Design☆341Updated this week
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆37Mar 29, 2022Updated 4 years ago
- B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction☆64Updated this week
- python tools for TCR:peptide-MHC modeling and analysis☆97Jun 26, 2026Updated last month
- ☆17Jun 24, 2021Updated 5 years ago
- A toolkit for single-cell immune profiling☆374Jul 9, 2026Updated last month
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆44Mar 30, 2026Updated 4 months ago
- IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:☆54Jan 7, 2026Updated 7 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆41Aug 18, 2020Updated 5 years ago
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆69Mar 12, 2026Updated 5 months ago
- Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2…☆31Jul 12, 2025Updated last year
- High-throughput mapping and domain partitioning of antigen receptor sequences☆56Updated this week
- [DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.☆40Jun 8, 2020Updated 6 years ago
- Detecting TCR involved in immune responses from single RepSeq datasets☆28Jun 17, 2019Updated 7 years ago
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…☆30Jan 31, 2023Updated 3 years ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆36Apr 1, 2022Updated 4 years ago
- A RepSeq processing swiss-knife☆43Mar 29, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- 📝 [Paper/Tutorial] T-cell repertoire annotation and motif discovery☆14Sep 15, 2025Updated 10 months ago
- A scanpy extension to analyse single-cell TCR and BCR data.☆264Updated this week
- Python library for immune repertoire analysis☆17Aug 6, 2026Updated last week
- An R package to analyze single-cell V(D)J data☆30Nov 13, 2023Updated 2 years ago
- BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data☆42Oct 15, 2025Updated 9 months ago
- predicting peptide and TCR interaction☆19Jan 27, 2021Updated 5 years ago
- TCR and BCR assembly from RNA-seq data☆360Aug 3, 2026Updated last week