antigenomics / vdjdb-dbLinks
🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!
☆137Updated 3 weeks ago
Alternatives and similar repositories for vdjdb-db
Users that are interested in vdjdb-db are comparing it to the libraries listed below
Sorting:
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆85Updated 3 years ago
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆94Updated 4 years ago
- [REPLACED by https://github.com/antigenomics/mirpy] Post-analysis of immune repertoire sequencing data☆139Updated last year
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆228Updated 2 months ago
- What you need to process the Quarterly DepMap-Omics releases from Terra☆119Updated last week
- TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data☆130Updated last year
- TCR and BCR assembly from RNA-seq data☆313Updated last week
- T/B cell receptor sequencing analysis notes☆259Updated 7 months ago
- A scanpy extension to analyse single-cell TCR and BCR data.☆234Updated last week
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆53Updated 3 years ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆120Updated last month
- Benchmarking computational single cell ATAC-seq methods☆184Updated 4 years ago
- R package to access DoRothEA's regulons☆149Updated last year
- flexible CDR based distance metrics☆65Updated 10 months ago
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆55Updated 2 weeks ago
- Python interface to running command-line and web-based MHC binding predictors☆97Updated 9 months ago
- MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.☆365Updated last week
- Code and annotations for the Tabula Muris single-cell transcriptomic dataset.☆192Updated 2 years ago
- RNA velocity estimation in Python☆171Updated 2 months ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 3 years ago
- Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)☆233Updated 2 weeks ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆290Updated 3 weeks ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆117Updated this week
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆138Updated 10 months ago
- Cell types enrichment analysis☆198Updated last year
- Clonotype Neighbor Graph Analysis☆89Updated 3 weeks ago
- ☆48Updated 3 years ago
- Course material in notebook format for learning about single cell bioinformatics methods☆99Updated 9 years ago
- Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute☆229Updated last month
- Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.☆22Updated 3 years ago