Alternatives and similar repositories for vdjdb-db:

Users that are interested in vdjdb-db are comparing it to the libraries listed below

• mikessh / vdjtools
  [REPLACED by https://github.com/antigenomics/mirpy] Post-analysis of immune repertoire sequencing data
  ☆135Updated 11 months ago
• immunoengineer / gliph
  Grouping of Lymphocyte Interactions by Paratope Hotspots
  ☆93Updated 4 years ago
• phbradley / tcr-dist
  Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)
  ☆83Updated 3 years ago
• slowkow / awesome-vdj
  📚 Tools and databases for analyzing HLA and VDJ genes.
  ☆220Updated last week
• Teichlab / tracer
  TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data
  ☆128Updated last year
• liulab-dfci / TRUST4
  TCR and BCR assembly from RNA-seq data
  ☆304Updated this week
• milaboratory / mixcr
  MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
  ☆351Updated last week
• openvax / mhctools
  Python interface to running command-line and web-based MHC binding predictors
  ☆96Updated 7 months ago
• sidhomj / DeepTCR
  Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
  ☆118Updated 2 years ago
• crazyhottommy / TCR-BCR-seq-analysis
  T/B cell receptor sequencing analysis notes
  ☆248Updated 5 months ago
• statbiophys / OLGA
  Compute generation probabilities of CDR3 amino acid and nucleotide sequences
  ☆52Updated 3 years ago
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆144Updated last year
• broadinstitute / depmap_omics
  What you need to process the Quarterly DepMap-Omics releases from Terra
  ☆115Updated this week
• kmayerb / tcrdist3
  flexible CDR based distance metrics
  ☆60Updated 8 months ago
• MathOnco / NeoPredPipe
  Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.
  ☆110Updated 8 months ago
• deeptools / pyBigWig
  A python extension for quick access to bigWig and bigBed files
  ☆228Updated 3 months ago
• simon-anders / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆124Updated 5 years ago
• griffithlab / pVACtools
  ☆155Updated 3 weeks ago
• RabadanLab / arcasHLA
  Fast and accurate in silico inference of HLA genotypes from RNA-seq
  ☆128Updated 8 months ago
• phbradley / conga
  Clonotype Neighbor Graph Analysis
  ☆89Updated last month
• dviraran / xCell
  Cell types enrichment analysis
  ☆195Updated 11 months ago
• pinellolab / scATAC-benchmarking
  Benchmarking computational single cell ATAC-seq methods
  ☆182Updated 4 years ago
• scverse / scirpy
  A scanpy extension to analyse single-cell TCR and BCR data.
  ☆230Updated last week
• sdparekh / zUMIs
  zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
  ☆279Updated 9 months ago
• BorchLab / scRepertoire
  A toolkit for single-cell immune profiling
  ☆332Updated last month
• Boyle-Lab / Blacklist
  Application for making ENCODE Blacklists
  ☆303Updated 4 years ago
• openvax / mhcflurry
  Peptide-MHC I binding affinity prediction
  ☆203Updated last month
• openvax / gtfparse
  Parsing tools for GTF (gene transfer format) files
  ☆119Updated 2 months ago
• ANHIG / IMGTHLA
  Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute
  ☆224Updated last week
• bli25 / RSEM_tutorial
  A short tutorial on how to use RSEM
  ☆136Updated 5 years ago