antigenomics / vdjdb-dbLinks
🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!
☆137Updated 2 weeks ago
Alternatives and similar repositories for vdjdb-db
Users that are interested in vdjdb-db are comparing it to the libraries listed below
Sorting:
- [REPLACED by https://github.com/antigenomics/mirpy] Post-analysis of immune repertoire sequencing data☆138Updated last year
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆93Updated 4 years ago
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆223Updated last month
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆84Updated 3 years ago
- TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data☆130Updated last year
- MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.☆356Updated 3 weeks ago
- TCR and BCR assembly from RNA-seq data☆310Updated last month
- R package to access DoRothEA's regulons☆148Updated last year
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆119Updated 2 years ago
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆53Updated 3 years ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆133Updated 9 months ago
- T/B cell receptor sequencing analysis notes☆254Updated 6 months ago
- flexible CDR based distance metrics☆62Updated 9 months ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆114Updated last week
- A scanpy extension to analyse single-cell TCR and BCR data.☆231Updated last week
- Benchmarking computational single cell ATAC-seq methods☆183Updated 4 years ago
- Clonotype Neighbor Graph Analysis☆89Updated 2 months ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆287Updated 3 weeks ago
- Python interface to running command-line and web-based MHC binding predictors☆96Updated 7 months ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 2 years ago
- A python extension for quick access to bigWig and bigBed files☆231Updated 4 months ago
- Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.☆110Updated 9 months ago
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆160Updated 3 months ago
- Course material in notebook format for learning about single cell bioinformatics methods☆102Updated 8 years ago
- Cell types enrichment analysis☆197Updated last year
- ☆157Updated this week
- ☆23Updated 8 years ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆88Updated 5 years ago
- Code and annotations for the Tabula Muris single-cell transcriptomic dataset.☆193Updated 2 years ago
- RNA velocity estimation in Python☆170Updated last month