phbradley / tcr-dist
Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)
β80Updated 3 years ago
Alternatives and similar repositories for tcr-dist:
Users that are interested in tcr-dist are comparing it to the libraries listed below
- Grouping of Lymphocyte Interactions by Paratope Hotspotsβ91Updated 4 years ago
- flexible CDR based distance metricsβ58Updated 6 months ago
- ποΈ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!β134Updated this week
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Dataβ117Updated 2 years ago
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequencβ¦β29Updated 2 years ago
- β38Updated 4 years ago
- Clonotype Neighbor Graph Analysisβ83Updated 5 months ago
- β64Updated last year
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigenβ78Updated 2 years ago
- Compute generation probabilities of CDR3 amino acid and nucleotide sequencesβ50Updated 3 years ago
- Deep Learning Method to Identify Cancer Associated TCRsβ46Updated 2 years ago
- TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq dataβ126Updated last year
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' dataβ112Updated this week
- Using TCR and expression for sequence embeddingβ52Updated last month
- R package to access DoRothEA's regulonsβ142Updated last year
- [REPLACED by https://github.com/antigenomics/mirpy] Post-analysis of immune repertoire sequencing dataβ133Updated 9 months ago
- HLA-II ligand predictor.β41Updated last year
- β47Updated 2 years ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.β87Updated 5 years ago
- An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.β21Updated last year
- βοΈ Matching T-cell repertoire against a database of TCR antigen specificitiesβ38Updated 6 years ago
- Benchmarking computational single cell ATAC-seq methodsβ180Updated 4 years ago
- Immunology-related bioinformatics data and toolsβ71Updated 10 months ago
- β37Updated 2 years ago
- β29Updated 3 months ago
- π Tools and databases for analyzing HLA and VDJ genes.β217Updated 2 months ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.β66Updated this week
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding predictionβ31Updated 2 years ago
- What you need to process the Quarterly DepMap-Omics releases from Terraβ114Updated this week
- kallisto | bustools workflow for pre-processing single-cell RNA-seq dataβ117Updated 2 years ago