phbradley / tcr-dist

Related projects: ⓘ

• immunoengineer / gliph
  Grouping of Lymphocyte Interactions by Paratope Hotspots
  ☆90Updated 3 years ago
• kmayerb / tcrdist3
  flexible CDR based distance metrics
  ☆53Updated last month
• antigenomics / vdjdb-db
  🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!
  ☆131Updated this week
• sidhomj / DeepTCR
  Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
  ☆113Updated last year
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆132Updated 6 months ago
• broadinstitute / depmap_omics
  What you need to process the Quarterly DepMap-Omics releases from Terra
  ☆109Updated this week
• zktuong / dandelion
  dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data
  ☆103Updated this week
• theislab / tcellmatch
  ☆37Updated 4 years ago
• hbc / NGS_Data_Analysis_Course
  ☆22Updated 8 years ago
• phbradley / conga
  Clonotype Neighbor Graph Analysis
  ☆80Updated last week
• emmijokinen / TCRGP
  TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…
  ☆26Updated last year
• statbiophys / OLGA
  Compute generation probabilities of CDR3 amino acid and nucleotide sequences
  ☆45Updated 3 years ago
• pinellolab / scATAC-benchmarking
  Benchmarking computational single cell ATAC-seq methods
  ☆176Updated 3 years ago
• Teichlab / tracer
  TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data
  ☆123Updated 9 months ago
• pachterlab / kallistobustools
  kallisto | bustools workflow for pre-processing single-cell RNA-seq data
  ☆115Updated 2 years ago
• mikessh / vdjtools
  Post-analysis of immune repertoire sequencing data
  ☆129Updated 3 months ago
• slowkow / awesome-vdj
  📚 Tools and databases for analyzing HLA and VDJ genes.
  ☆201Updated 4 months ago
• IdoSpringer / ERGO-II
  ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction
  ☆29Updated 2 years ago
• tianshilu / pMTnet
  Deep Learning the T Cell Receptor Binding Specificity of Neoantigen
  ☆76Updated 2 years ago
• RabadanLab / arcasHLA
  Fast and accurate in silico inference of HLA genotypes from RNA-seq
  ☆114Updated 3 weeks ago
• asncd / MIMOSCA
  A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.
  ☆82Updated 5 years ago
• mdozmorov / Cancer_notes
  A continually expanding collection of cancer genomics notes and data
  ☆101Updated 2 months ago
• Teichlab / embl-single-cell-course-2016
  Material for lecture at the EMBL Single Cell Course 2016
  ☆47Updated 8 years ago
• GregorySchwartz / too-many-cells
  Cluster single cells and analyze cell clade relationships with colorful visualizations.
  ☆104Updated 9 months ago
• mnielLab / NetTCR-2.0
  NetTCR-2.0. Sequence-based prediction of peptide-TCR binding
  ☆32Updated 2 years ago
• YeoLab / eCLIP
  ☆37Updated last year
• PierreBSC / Viral-Track
  ☆55Updated 4 years ago
• czbiohub-sf / tabula-muris
  Code and annotations for the Tabula Muris single-cell transcriptomic dataset.
  ☆185Updated last year
• liulab-dfci / TRUST4
  TCR and BCR assembly from RNA-seq data
  ☆270Updated last month
• bioinfo-ibms-pumc / SCSA
  SCSA: cell type annotation for single-cell RNA-seq data
  ☆80Updated last year