peterghawkins-regn / tcrvalidLinks
☆11Updated last year
Alternatives and similar repositories for tcrvalid
Users that are interested in tcrvalid are comparing it to the libraries listed below
Sorting:
- ☆16Updated 2 weeks ago
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆28Updated 4 months ago
- 📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential☆19Updated 3 weeks ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆72Updated 2 years ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆33Updated 3 years ago
- Large language modeling applied to T-cell receptor (TCR) sequences.☆56Updated 3 years ago
- Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2…☆29Updated last month
- ☆20Updated 2 years ago
- HLA-II ligand predictor.☆44Updated 2 years ago
- TCR validated database☆39Updated 3 months ago
- python tools for TCR:peptide-MHC modeling and analysis☆82Updated last year
- Generic TCR-epitope recognition prediction using CNN approach on both known and novel epitopes☆16Updated 2 years ago
- surrogate quantitative interpretability for deepnets☆24Updated 3 weeks ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆35Updated 3 years ago
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆42Updated 3 weeks ago
- The code for UniPMT☆15Updated 5 months ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 2 years ago
- an online cancer cell line catalogue integrating HLA type, predicted neo-epitopes, virus and gene expression☆11Updated last year
- Absolve antibody variable domain sequence analysis☆18Updated 6 years ago
- HLA-I ligand predictor☆43Updated 8 months ago
- Functional Embedding of Gene Signatures☆46Updated last year
- R package for functionally scoring phosphorylation sites☆21Updated 5 years ago
- RiboNN: predicting translation efficiencies from mRNA sequences☆32Updated last month
- ☆17Updated 4 years ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆39Updated 2 months ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆48Updated last year
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆56Updated last year
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆50Updated 6 years ago
- Collection of papers related to BCR repertoire analyses☆18Updated 3 years ago
- flexible CDR based distance metrics☆66Updated last year