Alternatives and similar repositories for tcrvalid

Users that are interested in tcrvalid are comparing it to the libraries listed below

• antigenomics / tcren-ms
  📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential
  ☆24Updated last month
• schumacherlab / STAPLER
  STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…
  ☆28Updated 6 months ago
• viragbioinfo / IMMREP_2022_TCRSpecificity
  ☆21Updated 3 years ago
• phbradley / TCRdock
  python tools for TCR:peptide-MHC modeling and analysis
  ☆82Updated last year
• wukevin / tcr-bert
  Large language modeling applied to T-cell receptor (TCR) sequences.
  ☆57Updated 3 years ago
• frankligy / DeepImmuno
  Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity
  ☆73Updated 2 years ago
• PaccMann / TITAN
  Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2…
  ☆30Updated 4 months ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆45Updated 2 years ago
• chenhcs / FRoGS
  Functional Embedding of Gene Signatures
  ☆47Updated last year
• IdoSpringer / ERGO-II
  ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction
  ☆34Updated 3 years ago
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆56Updated last year
• Genentech / Absolve
  Absolve antibody variable domain sequence analysis
  ☆18Updated 7 years ago
• ethanmock / UniPMT
  The code for UniPMT
  ☆16Updated 7 months ago
• pmoris / ImRex
  Generic TCR-epitope recognition prediction using CNN approach on both known and novel epitopes
  ☆17Updated 2 years ago
• brineylab / abstar
  VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.
  ☆43Updated 3 months ago
• mnielLab / NetTCR-2.0
  NetTCR-2.0. Sequence-based prediction of peptide-TCR binding
  ☆36Updated 3 years ago
• statbiophys / soNNia
  ☆17Updated last month
• pjsample / human_5utr_modeling
  Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.
  ☆53Updated 6 years ago
• schumacherlab / TCRvdb
  TCR validated database
  ☆41Updated 6 months ago
• GfellerLab / MixMHCpred
  HLA-I ligand predictor
  ☆43Updated last month
• Abalign / Abalign
  A visualization software for antibody multi sequence alignment
  ☆21Updated last year
• ntranoslab / esm-variants
  ☆82Updated 2 years ago
• ShenLab / gMVP
  ☆21Updated 3 years ago
• bioinformatics-sannio / ncrna-deep
  Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"
  ☆16Updated 4 years ago
• kekegg / DLEPS
  A Deep Learning based Efficacy Prediction System for drug discovery
  ☆73Updated 2 years ago
• JamieHeather / stitchr
  Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info
  ☆59Updated 2 months ago
• johli / seqprop
  Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor
  ☆50Updated last year
• regeneron-mpds / TCRAI
  ☆17Updated 4 years ago
• TencentAILabHealthcare / DeepAIR
  ☆38Updated 2 years ago
• FPPGroup / CodonBERT
  CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.
  ☆40Updated last year