Alternatives and similar repositories for gliph:

Users that are interested in gliph are comparing it to the libraries listed below

• phbradley / tcr-dist
  Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)
  ☆81Updated 3 years ago
• kmayerb / tcrdist3
  flexible CDR based distance metrics
  ☆58Updated 7 months ago
• phbradley / conga
  Clonotype Neighbor Graph Analysis
  ☆86Updated 2 weeks ago
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆143Updated last year
• zktuong / dandelion
  dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data
  ☆112Updated last week
• statbiophys / OLGA
  Compute generation probabilities of CDR3 amino acid and nucleotide sequences
  ☆51Updated 3 years ago
• mhorlbeck / ScreenProcessing
  ☆64Updated last year
• Teichlab / tracer
  TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data
  ☆126Updated last year
• antigenomics / vdjdb-db
  🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!
  ☆135Updated this week
• theislab / tcellmatch
  ☆38Updated 4 years ago
• PierreBSC / Viral-Track
  ☆57Updated 4 years ago
• BorchLab / Trex
  Using TCR and expression for sequence embedding
  ☆53Updated 2 months ago
• asncd / MIMOSCA
  A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.
  ☆87Updated 5 years ago
• antigenomics / vdjmatch
  ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities
  ☆38Updated 6 years ago
• timoast / sinto
  Tools for single-cell data processing
  ☆123Updated 10 months ago
• GfellerLab / EPIC
  Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.
  ☆80Updated last year
• RabadanLab / arcasHLA
  Fast and accurate in silico inference of HLA genotypes from RNA-seq
  ☆127Updated 7 months ago
• BUStools / bustools
  Tools for working with BUS files
  ☆95Updated 5 months ago
• Teichlab / embl-single-cell-course-2016
  Material for lecture at the EMBL Single Cell Course 2016
  ☆47Updated 9 years ago
• pachterlab / kallistobustools
  kallisto | bustools workflow for pre-processing single-cell RNA-seq data
  ☆118Updated 2 years ago
• mdozmorov / Immuno_notes
  Immunology-related bioinformatics data and tools
  ☆72Updated 11 months ago
• sidhomj / DeepTCR
  Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
  ☆118Updated 2 years ago
• GuoBioinfoLab / CATT
  An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.
  ☆21Updated last year
• mikessh / vdjtools
  [REPLACED by https://github.com/antigenomics/mirpy] Post-analysis of immune repertoire sequencing data
  ☆135Updated 10 months ago
• broadinstitute / Celligner_ms
  Code related to the Celligner manuscript
  ☆46Updated 4 years ago
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆80Updated 5 months ago
• kundajelab / chrombpnet
  Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)
  ☆151Updated 2 months ago
• andrewrech / antigen.garnish
  ☆47Updated 2 years ago
• YeoLab / eCLIP
  ☆37Updated 2 years ago
• liulab-dfci / MAGeCK
  Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…
  ☆28Updated 4 years ago