immunoengineer / gliphLinks
Grouping of Lymphocyte Interactions by Paratope Hotspots
☆93Updated 4 years ago
Alternatives and similar repositories for gliph
Users that are interested in gliph are comparing it to the libraries listed below
Sorting:
- flexible CDR based distance metrics☆62Updated 9 months ago
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆84Updated 3 years ago
- R package to access DoRothEA's regulons☆148Updated last year
- TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data☆130Updated last year
- Clonotype Neighbor Graph Analysis☆89Updated 2 months ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆133Updated 9 months ago
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆53Updated 3 years ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆114Updated last week
- 🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!☆137Updated 2 weeks ago
- ☆64Updated last year
- ☆48Updated 2 years ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 2 years ago
- Immunology-related bioinformatics data and tools☆73Updated last year
- Material for lecture at the EMBL Single Cell Course 2016☆47Updated 9 years ago
- Code related to the Celligner manuscript☆46Updated 4 years ago
- Tools for single-cell data processing☆124Updated last year
- [REPLACED by https://github.com/antigenomics/mirpy] Post-analysis of immune repertoire sequencing data☆138Updated last year
- Using TCR and expression for sequence embedding☆54Updated 4 months ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆82Updated last year
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆88Updated 5 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- ☆23Updated 8 years ago
- ☆57Updated 4 years ago
- R package for the analysis of single-cell immune repertoires☆42Updated 3 months ago
- ☆40Updated 4 years ago
- Tools for working with BUS files☆99Updated last week
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆112Updated 7 months ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆132Updated 2 years ago
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆223Updated last month
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated last month