Grouping of Lymphocyte Interactions by Paratope Hotspots
☆95Dec 4, 2020Updated 5 years ago
Alternatives and similar repositories for gliph
Users that are interested in gliph are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Git-based antigen specificity database storage & management.☆155Jun 11, 2026Updated last month
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆87Oct 6, 2021Updated 4 years ago
- R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…☆29Oct 1, 2022Updated 3 years ago
- Clonotype Neighbor Graph Analysis☆100Jun 15, 2026Updated last month
- flexible CDR based distance metrics☆74Dec 16, 2025Updated 7 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Detecting TCR involved in immune responses from single RepSeq datasets☆28Jun 17, 2019Updated 7 years ago
- ☆17Jun 24, 2021Updated 5 years ago
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆69Mar 12, 2026Updated 4 months ago
- Matching T-cell receptor repertoires to a database of antigen specificities☆39Updated this week
- MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.☆396Jul 10, 2026Updated last week
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆122Sep 16, 2025Updated 10 months ago
- TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data☆136Nov 28, 2023Updated 2 years ago
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆67Nov 18, 2025Updated 8 months ago
- Generic TCR-epitope recognition prediction using CNN approach on both known and novel epitopes☆17May 22, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆41Aug 18, 2020Updated 5 years ago
- 📝 [Paper/Tutorial] T-cell repertoire annotation and motif discovery☆14Sep 15, 2025Updated 10 months ago
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆93Jun 14, 2022Updated 4 years ago
- Analysis of immune repertoire sequencing results☆144Updated this week
- An R package to analyze single-cell V(D)J data☆30Nov 13, 2023Updated 2 years ago
- T cell Receptor and B cell Receptor assembly from single cell RNA sequencing data☆10Aug 27, 2017Updated 8 years ago
- Summary statistics for repertoires☆17Feb 1, 2023Updated 3 years ago
- ☆49Jul 7, 2022Updated 4 years ago
- Ultrafast TCR clustering algorithm based on geometric isometry☆76Oct 16, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆40Jun 24, 2025Updated last year
- CDR3 clustering module providing a new method for fast and accurate clustering of large data sets of CDR3 amino acid sequences, and offer…☆56Apr 3, 2024Updated 2 years ago
- imNet: a Sequence Network Construction Toolkit☆20Jul 7, 2020Updated 6 years ago
- High-throughput mapping and domain partitioning of antigen receptor sequences☆55Updated this week
- Infer selection pressures on features of amino acid CDR3 sequences.☆25Apr 17, 2024Updated 2 years ago
- 🧬 immunarch [R package] – Multi-Modal Immune Repertoire Analytics for Immunotherapy and Vaccine Design☆339Nov 18, 2025Updated 8 months ago
- ☆14Mar 18, 2022Updated 4 years ago
- 🛜 A lightweight immune repertoire browser☆28Dec 10, 2019Updated 6 years ago
- RAGE-seq scripts☆18Aug 30, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- TCR and BCR assembly from RNA-seq data☆357Updated this week
- Differential Expression with Capture Efficiency adjustmeNT☆15Jan 3, 2023Updated 3 years ago
- An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.☆21Nov 19, 2025Updated 8 months ago
- pygor3 repository☆10Nov 20, 2025Updated 8 months ago
- IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:☆54Jan 7, 2026Updated 6 months ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆76Updated this week
- A pipeline for complete and accurate recovery of TCR repertoires from high throughput sequencing data.☆23Sep 10, 2023Updated 2 years ago