viragbioinfo / IMMREP_2022_TCRSpecificity
☆19Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for IMMREP_2022_TCRSpecificity
- ☆66Updated last year
- python tools for TCR:peptide-MHC modeling and analysis☆66Updated 6 months ago
- ☆44Updated 11 months ago
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆25Updated 6 months ago
- ☆33Updated last month
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆33Updated 2 years ago
- 📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential☆13Updated this week
- Large language modeling applied to T-cell receptor (TCR) sequences.☆47Updated 2 years ago
- ☆70Updated last month
- Generic TCR-epitope recognition prediction using CNN approach on both known and novel epitopes☆15Updated last year
- ☆30Updated last year
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆76Updated 2 years ago
- Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2…☆29Updated last year
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆46Updated 6 months ago
- Predicting immunogenic peptide recognized by TCR through ensemble deep learning☆12Updated 6 months ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆29Updated 2 years ago
- Code repository of "Deep generative design of RNA family sequences"☆28Updated 3 months ago
- Functional Embedding of Gene Signatures☆36Updated 8 months ago
- ☆63Updated last month
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆62Updated last year
- ☆13Updated 2 months ago
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆83Updated 2 months ago
- Computational Optimization of DNA Activity (CODA)☆32Updated last month
- Mutation effects predicted from sequence co-variation☆61Updated 7 years ago
- ☆40Updated 2 years ago
- Evolutionary velocity with protein language models☆83Updated last year
- ☆29Updated 10 months ago
- Neural networks for deep mutational scanning data☆66Updated this week
- The code for paper "Synthetic Promoter Design in Escherichia coli based on Deep Genera-tive Network"☆26Updated 4 years ago
- ☆11Updated 11 months ago