viragbioinfo / IMMREP_2022_TCRSpecificityLinks
☆20Updated 3 years ago
Alternatives and similar repositories for IMMREP_2022_TCRSpecificity
Users that are interested in IMMREP_2022_TCRSpecificity are comparing it to the libraries listed below
Sorting:
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆28Updated 6 months ago
- Large language modeling applied to T-cell receptor (TCR) sequences.☆57Updated 3 years ago
- ☆51Updated last year
- python tools for TCR:peptide-MHC modeling and analysis☆82Updated last year
- ☆91Updated last year
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆73Updated 2 years ago
- 📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential☆22Updated 3 weeks ago
- ☆80Updated 2 years ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆34Updated 3 years ago
- Generic TCR-epitope recognition prediction using CNN approach on both known and novel epitopes☆17Updated 2 years ago
- HLA-II ligand predictor.☆45Updated 2 years ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆56Updated last year
- ☆38Updated 2 years ago
- HLA-I ligand predictor☆43Updated last month
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆35Updated 3 years ago
- Predicting immunogenic peptide recognized by TCR through ensemble deep learning☆17Updated last year
- ☆24Updated last year
- ☆48Updated 3 years ago
- Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2…☆30Updated 3 months ago
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆86Updated 3 years ago
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆40Updated last year
- ☆12Updated last year
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆183Updated last year
- ☆45Updated 7 months ago
- ☆13Updated last year
- The code for UniPMT☆16Updated 7 months ago
- Code repository of "Deep generative design of RNA family sequences"☆38Updated last year
- ☆96Updated 4 months ago
- an online cancer cell line catalogue integrating HLA type, predicted neo-epitopes, virus and gene expression☆11Updated last year
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆102Updated 2 weeks ago