sidhomj / DeepTCRLinks
Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
☆122Updated 2 months ago
Alternatives and similar repositories for DeepTCR
Users that are interested in DeepTCR are comparing it to the libraries listed below
Sorting:
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆86Updated 3 years ago
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆86Updated 4 years ago
- ☆62Updated 3 months ago
- Computational Optimization of DNA Activity (CODA)☆65Updated 8 months ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆35Updated 3 years ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆154Updated 9 months ago
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆233Updated 2 months ago
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆96Updated 5 years ago
- Single-cell ATAC-seq analysis via Latent feature Extraction☆103Updated 2 years ago
- What you need to process the Quarterly DepMap-Omics releases from Terra☆125Updated 2 months ago
- A modular framework for multimodal cross-cell-type transcriptional regulation models☆96Updated 3 months ago
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆57Updated 4 months ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆145Updated 2 years ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆82Updated last year
- ☆34Updated 10 months ago
- A visible neural network model for drug response prediction☆149Updated 2 years ago
- ☆145Updated last year
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆73Updated last week
- flexible CDR based distance metrics☆69Updated 3 weeks ago
- Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network☆106Updated 2 years ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆34Updated 3 years ago
- predicting expression effects of human genome variants ab initio from sequence☆132Updated 10 months ago
- Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.☆98Updated 2 months ago
- code to run sei and obtain sei and sequence class predictions☆109Updated 2 years ago
- Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python☆30Updated 3 years ago
- ☆96Updated 4 years ago
- 📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential☆24Updated 2 months ago
- ☆41Updated 5 years ago
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆109Updated 2 months ago
- Models and datasets for perturbational single-cell omics☆168Updated 3 years ago