Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
☆122Sep 16, 2025Updated 6 months ago
Alternatives and similar repositories for DeepTCR
Users that are interested in DeepTCR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Clonotype Neighbor Graph Analysis☆95Feb 12, 2026Updated 2 months ago
- ☆17Jun 24, 2021Updated 4 years ago
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆87Oct 6, 2021Updated 4 years ago
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆90Jun 14, 2022Updated 3 years ago
- Deep learning reveals predictive sequence concepts within immune repertoires to immunotherapy☆14Sep 17, 2022Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆41Aug 18, 2020Updated 5 years ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆74Updated this week
- [Deprectated, use vdjmatch2 instead] ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Feb 23, 2026Updated last month
- 🗂️ Git-based TCR database storage & management. Submissions welcome!☆153Mar 27, 2026Updated 2 weeks ago
- flexible CDR based distance metrics☆71Dec 16, 2025Updated 3 months ago
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆95Dec 4, 2020Updated 5 years ago
- Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2…☆30Jul 12, 2025Updated 9 months ago
- 🧬 immunarch [R package] – Multi-Modal Immune Repertoire Analytics for Immunotherapy and Vaccine Design☆338Nov 18, 2025Updated 4 months ago
- A toolkit for single-cell immune profiling☆366Apr 3, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆64Mar 12, 2026Updated last month
- Generic TCR-epitope recognition prediction using CNN approach on both known and novel epitopes☆17May 22, 2023Updated 2 years ago
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆237Feb 12, 2026Updated 2 months ago
- T/B cell receptor sequencing analysis notes☆275Dec 1, 2024Updated last year
- Mapping the Functional Landscape of TCR Repertoire☆36Oct 8, 2021Updated 4 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Jan 15, 2023Updated 3 years ago
- Summary statistics for repertoires☆17Feb 1, 2023Updated 3 years ago
- ☆40Apr 7, 2023Updated 3 years ago
- Deep Learning Method to Identify Cancer Associated TCRs☆46Aug 2, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- A scanpy extension to analyse single-cell TCR and BCR data.☆246Updated this week
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆36Mar 29, 2022Updated 4 years ago
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…☆30Jan 31, 2023Updated 3 years ago
- Using TCR and expression for sequence embedding☆63Jan 6, 2026Updated 3 months ago
- python tools for TCR:peptide-MHC modeling and analysis☆91Apr 12, 2024Updated 2 years ago
- DeepRC: Immune repertoire classification with attention-based deep massive multiple instance learning☆125Sep 12, 2023Updated 2 years ago
- Large language modeling applied to T-cell receptor (TCR) sequences.☆59May 4, 2022Updated 3 years ago
- Infer selection pressures on features of amino acid CDR3 sequences.☆25Apr 17, 2024Updated last year
- code repository for Lagattuta et al. "Repertoire analyses reveal T cell receptor sequence features that influence T cell fate." Nat. Imm.…☆14Jan 28, 2025Updated last year
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data☆136Nov 28, 2023Updated 2 years ago
- [Deprecated, see README] Post-analysis of immune repertoire sequencing data☆144Mar 26, 2026Updated 2 weeks ago
- PRedictor of IMmunogenic Epitopes☆29Sep 24, 2025Updated 6 months ago
- An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.☆21Nov 19, 2025Updated 4 months ago
- Parsing MHC nomenclature in the wild☆19Updated this week
- ☆56Nov 1, 2024Updated last year
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆19Aug 26, 2020Updated 5 years ago