Ultrafast TCR clustering algorithm based on geometric isometry
☆76Oct 16, 2024Updated last year
Alternatives and similar repositories for GIANA
Users that are interested in GIANA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆25Jan 23, 2023Updated 3 years ago
- Highly specific clustering of T cell receptor CDR3s☆43Jun 21, 2022Updated 4 years ago
- SCAVENGE is a method to optimize the inference of functional and genetic associations to specific cells at single-cell resolution.☆94Sep 1, 2023Updated 2 years ago
- CUT&RUN and CUT&Tag data processing and analysis☆114Mar 4, 2025Updated last year
- flexible CDR based distance metrics☆73Dec 16, 2025Updated 6 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆67Nov 18, 2025Updated 7 months ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆30May 16, 2024Updated 2 years ago
- R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…☆28Oct 1, 2022Updated 3 years ago
- Highly informative TCR representation model☆16Nov 26, 2025Updated 7 months ago
- TCR and BCR assembly from RNA-seq data☆355Jun 21, 2026Updated 2 weeks ago
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆95Dec 4, 2020Updated 5 years ago
- A database of T-cell receptor sequences☆11Aug 6, 2025Updated 11 months ago
- code repository for Lagattuta et al. "Repertoire analyses reveal T cell receptor sequence features that influence T cell fate." Nat. Imm.…☆14Jan 28, 2025Updated last year
- Clonotype Neighbor Graph Analysis☆98Jun 15, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Reproducibility Repo for mvTCR paper☆13Apr 2, 2024Updated 2 years ago
- A pipeline for complete and accurate recovery of TCR repertoires from high throughput sequencing data.☆23Sep 10, 2023Updated 2 years ago
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆242Feb 12, 2026Updated 4 months ago
- ☆22Oct 4, 2022Updated 3 years ago
- Foundation model-driven lab☆33Mar 25, 2026Updated 3 months ago
- Decombinator: fast, error-correcting analysis of TCR repertoires☆28May 18, 2026Updated last month
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆11Jan 21, 2022Updated 4 years ago
- ☆40Jun 24, 2025Updated last year
- Detecting TCR involved in immune responses from single RepSeq datasets☆28Jun 17, 2019Updated 7 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- T cell Receptor and B cell Receptor assembly from single cell RNA sequencing data☆10Aug 27, 2017Updated 8 years ago
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆68Mar 12, 2026Updated 3 months ago
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…☆30Jan 31, 2023Updated 3 years ago
- Mapping the Functional Landscape of TCR Repertoire☆36Oct 8, 2021Updated 4 years ago
- A RepSeq processing swiss-knife☆43Mar 29, 2024Updated 2 years ago
- 📝 [Paper/Tutorial] T-cell repertoire annotation and motif discovery☆14Sep 15, 2025Updated 9 months ago
- ☆17Jun 24, 2021Updated 5 years ago
- ☆41Aug 18, 2020Updated 5 years ago
- Deep Learning Method to Identify Cancer Associated TCRs☆46Aug 2, 2022Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆36Mar 29, 2022Updated 4 years ago
- A toolkit for single-cell immune profiling☆371Jun 27, 2026Updated last week
- An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.☆21Nov 19, 2025Updated 7 months ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆27Oct 18, 2022Updated 3 years ago
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆87Oct 6, 2021Updated 4 years ago
- T/B cell receptor sequencing analysis notes☆278Dec 1, 2024Updated last year
- ☆58Nov 1, 2024Updated last year