Alternatives and similar repositories for GIANA

Users that are interested in GIANA are comparing it to the libraries listed below

• s175573 / iSMART
  Highly specific clustering of T cell receptor CDR3s
  ☆43Updated 3 years ago
• BorchLab / Trex
  Using TCR and expression for sequence embedding
  ☆58Updated 3 weeks ago
• HetzDra / turboGliph
  R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…
  ☆24Updated 2 years ago
• phbradley / conga
  Clonotype Neighbor Graph Analysis
  ☆90Updated 3 weeks ago
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆87Updated 8 months ago
• saezlab / visium_heart
  Spatial transcriptomics of heart tissue
  ☆93Updated last year
• BlishLab / scriabin
  Analysis of cell-cell communication at single-cell resolution
  ☆104Updated last year
• alexyermanos / Platypus
  R package for the analysis of single-cell immune repertoires
  ☆43Updated 7 months ago
• SchubertLab / mvTCR
  ☆54Updated 10 months ago
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆150Updated last year
• sankaranlab / SCAVENGE
  SCAVENGE is a method to optimize the inference of functional and genetic associations to specific cells at single-cell resolution.
  ☆88Updated 2 years ago
• immunoengineer / gliph
  Grouping of Lymphocyte Interactions by Paratope Hotspots
  ☆97Updated 4 years ago
• KChen-lab / METAFlux
  ☆71Updated last year
• Teichlab / cellhint
  A tool for semi-automatic cell type harmonization and integration
  ☆110Updated 5 months ago
• sankaranlab / mecom_var
  ☆25Updated 2 years ago
• zktuong / dandelion
  dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data
  ☆118Updated last week
• jcao89757 / TESSA
  Mapping the Functional Landscape of TCR Repertoire
  ☆34Updated 3 years ago
• YosefLab / popV
  ☆80Updated last week
• lanagarmire / Asgard
  ☆43Updated last year
• WanluLiuLab / scAtlasVAE
  ☆38Updated 2 months ago
• ggjlab / HCL
  Tools used in Human Cell Landscape(HCL)
  ☆55Updated 5 years ago
• Durenlab / LINGER
  ☆114Updated 3 months ago
• czbiohub-sf / tabula-sapiens
  Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens
  ☆42Updated 3 weeks ago
• omnideconv / omnideconv
  Unified access to several second-generation deconvolution methods
  ☆74Updated 2 weeks ago
• Single-Cell-Genomics-Group-CNAG-CRG / Tumor-Immune-Cell-Atlas
  Code repository for the Tumor Immune Cell Atlas (TICA) project
  ☆64Updated 3 years ago
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆46Updated last year
• morris-lab / BiddyetalWorkflow
  This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.
  ☆32Updated last year
• mhorlbeck / ScreenProcessing
  ☆65Updated 2 years ago
• Japrin / STARTRAC
  STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
  ☆109Updated 4 months ago
• Hoohm / CITE-seq-Count
  A tool that allows to get UMI counts from a single cell protein assay
  ☆82Updated 4 months ago