phbradley / TCRdockLinks
python tools for TCR:peptide-MHC modeling and analysis
☆84Updated last year
Alternatives and similar repositories for TCRdock
Users that are interested in TCRdock are comparing it to the libraries listed below
Sorting:
- ☆83Updated 2 years ago
- Evolutionary velocity with protein language models☆94Updated 2 weeks ago
- ☆91Updated last year
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆74Updated 2 years ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆187Updated last year
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆58Updated last week
- Large language modeling applied to T-cell receptor (TCR) sequences.☆57Updated 3 years ago
- ☆96Updated 6 months ago
- ☆52Updated 2 years ago
- A visualization software for antibody multi sequence alignment☆22Updated last year
- Geometric deep learning of protein–DNA binding specificity☆76Updated 9 months ago
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆28Updated 8 months ago
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆106Updated this week
- Efficient evolution from protein language models☆217Updated 2 years ago
- ☆57Updated 2 years ago
- Install alphafold on the local machine, get out of docker.☆103Updated 4 years ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- Neural Networks for Protein Sequence Alignment☆134Updated last year
- alphafold3 architecture step by step walkthrough.☆147Updated 6 months ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆111Updated 4 months ago
- Code repository of "Deep generative design of RNA family sequences"☆40Updated last month
- Mutation effects predicted from sequence co-variation☆70Updated 8 years ago
- Convenience Python APIs for antibody numbering using ANARCI☆111Updated 7 months ago
- Bilingual Language Model for Protein Sequence and Structure☆287Updated 11 months ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆34Updated 3 years ago
- ☆45Updated 8 months ago
- https://www.nature.com/articles/s41598-020-74091-z#Tab1☆41Updated last year
- Protein language model trained on coding DNA☆51Updated last year
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆60Updated 4 years ago
- Antibody Numbering and Antigen Receptor ClassIfication☆253Updated last year