phbradley / TCRdockLinks
python tools for TCR:peptide-MHC modeling and analysis
☆82Updated last year
Alternatives and similar repositories for TCRdock
Users that are interested in TCRdock are comparing it to the libraries listed below
Sorting:
- ☆90Updated 11 months ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆73Updated 2 years ago
- Geometric deep learning of protein–DNA binding specificity☆75Updated 6 months ago
- Evolutionary velocity with protein language models☆94Updated last year
- Large language modeling applied to T-cell receptor (TCR) sequences.☆56Updated 3 years ago
- A visualization software for antibody multi sequence alignment☆20Updated last year
- ☆80Updated 2 years ago
- ☆50Updated last year
- Install alphafold on the local machine, get out of docker.☆104Updated 3 years ago
- ☆94Updated 3 months ago
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆28Updated 5 months ago
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆104Updated 3 weeks ago
- Code repository of "Deep generative design of RNA family sequences"☆38Updated last year
- ☆45Updated 6 months ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆183Updated last year
- ☆20Updated 3 years ago
- alphafold3 architecture step by step walkthrough.☆136Updated 3 months ago
- Efficient evolution from protein language models☆215Updated 2 years ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆56Updated last year
- Neural Networks for Protein Sequence Alignment☆128Updated 10 months ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- Official implement of paper "Multi-purpose RNA Language Modeling with Motif-aware Pre-training and Type-guided Fine-tuning"☆53Updated 11 months ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆34Updated 3 years ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆59Updated 4 years ago
- Mutation effects predicted from sequence co-variation☆69Updated 8 years ago
- Bioinformatics code for paper associated with deep diversification of AAV☆40Updated 10 months ago
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆144Updated 3 months ago
- Convenience Python APIs for antibody numbering using ANARCI☆105Updated 4 months ago
- De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments☆100Updated 2 weeks ago
- TCR validated database☆41Updated 5 months ago