python tools for TCR:peptide-MHC modeling and analysis
☆88Apr 12, 2024Updated last year
Alternatives and similar repositories for TCRdock
Users that are interested in TCRdock are comparing it to the libraries listed below
Sorting:
- ☆48Mar 26, 2025Updated 11 months ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆34Apr 1, 2022Updated 3 years ago
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions☆170Dec 24, 2023Updated 2 years ago
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…☆30Jan 31, 2023Updated 3 years ago
- flexible CDR based distance metrics☆71Dec 16, 2025Updated 2 months ago
- ☆18Nov 18, 2025Updated 3 months ago
- ☆12Mar 22, 2024Updated last year
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆28Apr 22, 2025Updated 10 months ago
- Predictor of TCR-epitope interactions☆34Sep 9, 2025Updated 5 months ago
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆86Oct 6, 2021Updated 4 years ago
- Convert TCR gene names☆15Dec 26, 2025Updated 2 months ago
- ☆17Jun 24, 2021Updated 4 years ago
- Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2…☆30Jul 12, 2025Updated 7 months ago
- 📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential☆24Sep 30, 2025Updated 5 months ago
- CDR3 clustering module providing a new method for fast and accurate clustering of large data sets of CDR3 amino acid sequences, and offer…☆54Apr 3, 2024Updated last year
- 🗂️ [vdjdb.com is up and running!] Git-based TCR database storage & management. Submissions welcome!☆152Feb 22, 2026Updated last week
- Clonotype Neighbor Graph Analysis☆95Feb 12, 2026Updated 2 weeks ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆36Mar 29, 2022Updated 3 years ago
- TEINet: a deep learning framework for prediction of TCR-epitope binding specificity☆16Jun 30, 2023Updated 2 years ago
- TEIM: TCR-Epitope Interaction Modeling☆56Jul 26, 2023Updated 2 years ago
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆90Jun 14, 2022Updated 3 years ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆123Sep 16, 2025Updated 5 months ago
- ☆14Jun 27, 2024Updated last year
- Python library for immune repertoire analysis☆17Jan 26, 2026Updated last month
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆26Oct 18, 2022Updated 3 years ago
- ☆41Aug 18, 2020Updated 5 years ago
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆64Aug 19, 2025Updated 6 months ago
- ☆31Jun 24, 2025Updated 8 months ago
- Large language modeling applied to T-cell receptor (TCR) sequences.☆59May 4, 2022Updated 3 years ago
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆237Feb 12, 2026Updated 2 weeks ago
- Using TCR and expression for sequence embedding☆62Jan 6, 2026Updated last month
- an online cancer cell line catalogue integrating HLA type, predicted neo-epitopes, virus and gene expression☆12Feb 26, 2024Updated 2 years ago
- HLA-I ligand predictor☆43Sep 24, 2025Updated 5 months ago
- ☆22Oct 4, 2022Updated 3 years ago
- Altered TCR Ligand Affinities and Structures☆12Dec 1, 2023Updated 2 years ago
- TLimmuno2: predicting MHC class II antigen immunogenicity through transfer learning☆12Jun 19, 2023Updated 2 years ago
- Sequence-based prediction of peptide-TCR interactions using paired chain data☆13Feb 2, 2026Updated last month
- Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute☆251Feb 11, 2026Updated 2 weeks ago
- MHC-peptide class II interaction prediction, binding, presentation☆22Mar 16, 2022Updated 3 years ago