Large language modeling applied to T-cell receptor (TCR) sequences.
☆59May 4, 2022Updated 3 years ago
Alternatives and similar repositories for tcr-bert
Users that are interested in tcr-bert are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2…☆30Jul 12, 2025Updated 8 months ago
- ☆17Jun 24, 2021Updated 4 years ago
- ☆48Mar 26, 2025Updated 11 months ago
- ☆52Dec 3, 2023Updated 2 years ago
- TABR-BERT: an Accurate and Robust BERT-based Transfer Learning Model for TCR-pMHC Interaction Prediction☆12Jul 19, 2024Updated last year
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆28Apr 22, 2025Updated 11 months ago
- Predictor of TCR-epitope interactions☆34Sep 9, 2025Updated 6 months ago
- Deep Learning Method to Identify Cancer Associated TCRs☆46Aug 2, 2022Updated 3 years ago
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆90Jun 14, 2022Updated 3 years ago
- Predicting immunogenic peptide recognized by TCR through ensemble deep learning☆17Apr 22, 2024Updated last year
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆36Mar 29, 2022Updated 3 years ago
- ☆11May 11, 2024Updated last year
- ☆18Apr 20, 2025Updated 11 months ago
- CLIP-based model for aligning epitopes to immune receptors☆12Apr 30, 2025Updated 10 months ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆77Apr 1, 2023Updated 2 years ago
- python tools for TCR:peptide-MHC modeling and analysis☆90Apr 12, 2024Updated last year
- ☆13May 19, 2025Updated 10 months ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆122Sep 16, 2025Updated 6 months ago
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆64Nov 18, 2025Updated 4 months ago
- A scanpy extension to analyse single-cell TCR and BCR data.☆246Updated this week
- code repository for Lagattuta et al. "Repertoire analyses reveal T cell receptor sequence features that influence T cell fate." Nat. Imm.…☆14Jan 28, 2025Updated last year
- TEIM: TCR-Epitope Interaction Modeling☆56Jul 26, 2023Updated 2 years ago
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆21Apr 14, 2025Updated 11 months ago
- ☆22Oct 4, 2022Updated 3 years ago
- ☆14May 15, 2024Updated last year
- All the fun and adventure of MHC naming, now in Python☆10Dec 2, 2022Updated 3 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Sep 13, 2023Updated 2 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Jan 15, 2023Updated 3 years ago
- 🧛 Deep generative models for TCR sequences 🧛☆17Apr 4, 2022Updated 3 years ago
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆87Oct 6, 2021Updated 4 years ago
- An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.☆21Nov 19, 2025Updated 4 months ago
- ☆15Nov 13, 2023Updated 2 years ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆34Apr 1, 2022Updated 3 years ago
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆64Mar 12, 2026Updated last week
- CDR3 clustering module providing a new method for fast and accurate clustering of large data sets of CDR3 amino acid sequences, and offer…☆55Apr 3, 2024Updated last year
- CellAnn☆12Nov 3, 2023Updated 2 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Feb 23, 2026Updated last month
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆106Dec 18, 2025Updated 3 months ago
- flexible CDR based distance metrics☆71Dec 16, 2025Updated 3 months ago