Alternatives and similar repositories for OLGA

Users that are interested in OLGA are comparing it to the libraries listed below

• immunoengineer / gliph
  Grouping of Lymphocyte Interactions by Paratope Hotspots
  ☆95Updated 4 years ago
• kmayerb / tcrdist3
  flexible CDR based distance metrics
  ☆66Updated last year
• phbradley / tcr-dist
  Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)
  ☆85Updated 3 years ago
• JamieHeather / stitchr
  Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info
  ☆57Updated 2 months ago
• broadinstitute / depmap_omics
  What you need to process the Quarterly DepMap-Omics releases from Terra
  ☆120Updated last week
• andrewrech / antigen.garnish
  ☆48Updated 3 years ago
• uio-bmi / immuneML
  immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.
  ☆68Updated last week
• antigenomics / vdjmatch
  ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities
  ☆38Updated 6 years ago
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆149Updated last year
• theislab / tcellmatch
  ☆40Updated 5 years ago
• mhorlbeck / ScreenProcessing
  ☆65Updated 2 years ago
• phbradley / conga
  Clonotype Neighbor Graph Analysis
  ☆90Updated 2 weeks ago
• Teichlab / tracer
  TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data
  ☆130Updated last year
• broadinstitute / Celligner_ms
  Code related to the Celligner manuscript
  ☆46Updated 4 years ago
• brineylab / grp-paper
  Code and data used in The Great Repertoire Project
  ☆30Updated 4 years ago
• s175573 / DeepCAT
  Deep Learning Method to Identify Cancer Associated TCRs
  ☆47Updated 3 years ago
• antigenomics / vdjdb-db
  🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!
  ☆140Updated this week
• alexyermanos / Platypus
  R package for the analysis of single-cell immune repertoires
  ☆43Updated 6 months ago
• nf-core / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆36Updated last year
• BorchLab / Trex
  Using TCR and expression for sequence embedding
  ☆58Updated last week
• saezlab / cosmosR
  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…
  ☆63Updated last month
• epigen / atacseq_pipeline
  Ultimate ATAC-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.
  ☆59Updated 2 weeks ago
• svalkiers / clusTCR
  CDR3 clustering module providing a new method for fast and accurate clustering of large data sets of CDR3 amino acid sequences, and offer…
  ☆55Updated last year
• HetzDra / turboGliph
  R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…
  ☆23Updated 2 years ago
• angelettilab / scMouseBcellFlu
  ☆18Updated 3 years ago
• s175573 / GIANA
  Ultrafast TCR clustering algorithm based on geometric isometry
  ☆68Updated 10 months ago
• emmijokinen / TCRGP
  TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…
  ☆30Updated 2 years ago
• PierreBSC / Viral-Track
  ☆61Updated 5 years ago
• pachterlab / kallistobustools
  kallisto | bustools workflow for pre-processing single-cell RNA-seq data
  ☆118Updated 3 years ago
• gexijin / idepGolem
  ☆41Updated last month