ANS_signature_scoring: A gene expression signature scoring Python package.
☆19Jan 18, 2026Updated 4 months ago
Alternatives and similar repositories for ANS_signature_scoring
Users that are interested in ANS_signature_scoring are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Repo with analysis code for the vascular atlas paper☆10Nov 22, 2024Updated last year
- ☆14Apr 11, 2024Updated 2 years ago
- ☆11May 24, 2024Updated 2 years ago
- Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.☆12Oct 1, 2024Updated last year
- Segmentation-free Analysis of In Situ Capture data☆14Apr 6, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆20Nov 18, 2022Updated 3 years ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆144Feb 20, 2025Updated last year
- Repel Visually Similar Colors for Colorblind Users (CRAN)☆10Jul 21, 2025Updated 10 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆41Nov 18, 2025Updated 6 months ago
- Functions to extract information from Oxford Nanopore sequencing data and alignments☆11Dec 4, 2025Updated 5 months ago
- Single-cell immune repertoire trajectory analysis in R☆12Aug 8, 2025Updated 9 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆88Aug 10, 2025Updated 9 months ago
- ☆13Nov 3, 2023Updated 2 years ago
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆21Aug 28, 2025Updated 8 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- code repository for Lagattuta et al. "Repertoire analyses reveal T cell receptor sequence features that influence T cell fate." Nat. Imm.…☆14Jan 28, 2025Updated last year
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆300May 11, 2026Updated 2 weeks ago
- Single-cell analysis with non-negative matrix factorization☆48Jul 24, 2025Updated 10 months ago
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆195Jan 30, 2026Updated 3 months ago
- ☆126Sep 4, 2025Updated 8 months ago
- Wrapper and helper functions to use bulk RNA-seq differential expression methods with single-cell data☆22Feb 4, 2024Updated 2 years ago
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆102Updated this week
- Interactive applications of stlearn☆15May 1, 2023Updated 3 years ago
- Gene group activity utility functions for Scanpy☆105Dec 21, 2024Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Using BCR and expression for sequence embedding☆27Apr 3, 2026Updated last month
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆57May 18, 2026Updated last week
- Feature selection for preserving biological trajectories in single-cell data☆22May 29, 2025Updated 11 months ago
- Easy single cell analysis platform for enrichment☆225Apr 3, 2026Updated last month
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Jan 16, 2024Updated 2 years ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆86Mar 19, 2026Updated 2 months ago
- Computational Biology- Spring 2021☆49Nov 1, 2021Updated 4 years ago
- Containerized cancer subtype prediction tools for gene expression, miRNA, DNA methylation, somatic mutations and copy number variation.☆36Apr 9, 2025Updated last year
- ☆12Sep 25, 2024Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Library and tool for annotating MAF files using Genome Nexus Webserver API☆13May 18, 2026Updated last week
- Multi-resolution Variational Inference☆23May 18, 2026Updated last week
- R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data☆23May 6, 2026Updated 2 weeks ago
- Create PyTorch Datasets from AnnData☆21Jan 6, 2026Updated 4 months ago
- SenePy is a set of tools to score single-cells based on their expression of cell-specific senescence markers. Please see the following pu…☆57Jan 30, 2025Updated last year
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 4 years ago
- ☆12Mar 5, 2024Updated 2 years ago