morrislab / pairtreeLinks
Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneity. Pairtree focuses on scaling to many more cancer samples and cancer cell subpopulations than other algorithms, and on producing concise and informative interactive characterizations of posterior uncertainty.
☆37Updated last year
Alternatives and similar repositories for pairtree
Users that are interested in pairtree are comparing it to the libraries listed below
Sorting:
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 10 months ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 2 months ago
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆22Updated last week
- interactive plots for differential expression analysis☆32Updated 2 months ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated 5 months ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Updated 5 years ago
- Codes and Data for FFPEsig manuscript☆17Updated last year
- DriverPower☆26Updated 4 months ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 3 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- Workflow for Sequenza, cellularity and ploidy☆18Updated last week
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and …☆12Updated last month
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 3 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆28Updated 2 months ago
- A toolkit for working with ATAC-seq data.☆24Updated 11 months ago
- ☆22Updated 5 months ago