HetzDra / turboGliphLinks
R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identify specificity groups in the T cell receptor repertoire based on local (motif sharing) and global (hamming distance) similarities.
☆24Updated 3 years ago
Alternatives and similar repositories for turboGliph
Users that are interested in turboGliph are comparing it to the libraries listed below
Sorting:
- ☆73Updated last year
- Using TCR and expression for sequence embedding☆59Updated last month
- A tool that allows to get UMI counts from a single cell protein assay☆85Updated 5 months ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆93Updated last week
- scWGCNA☆61Updated 2 years ago
- R package for Pathway RespOnsive GENe activity inference☆108Updated 2 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆80Updated 3 years ago
- ☆73Updated 2 years ago
- Functional Inference of Gene Regulation☆46Updated last year
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- Analysis of cell-cell communication at single-cell resolution☆104Updated last year
- Tools for single-cell data processing☆127Updated last year
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆41Updated 3 years ago
- R package to access DoRothEA's regulons☆150Updated last year
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆57Updated 4 years ago
- ☆30Updated 2 years ago
- ☆65Updated 2 years ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆42Updated last month
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆77Updated 5 months ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- Create cisTarget databases☆53Updated 3 months ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 4 years ago
- ☆62Updated 5 years ago
- ☆86Updated last month
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- A method to rapidly assess cell type identity using both functional and random gene sets☆39Updated 8 months ago
- R implementation of MULTI-seq sample classification workflow☆64Updated last year
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆32Updated last year