Alternatives and similar repositories for turboGliph

Users that are interested in turboGliph are comparing it to the libraries listed below

• Hoohm / CITE-seq-Count
  A tool that allows to get UMI counts from a single cell protein assay
  ☆87Updated 8 months ago
• hemberg-lab / scmap
  A tool for unsupervised projection of single cell RNA-seq data
  ☆96Updated 5 years ago
• BorchLab / Trex
  Using TCR and expression for sequence embedding
  ☆62Updated 2 weeks ago
• chris-mcginnis-ucsf / MULTI-seq
  R implementation of MULTI-seq sample classification workflow
  ☆65Updated 2 years ago
• ncborcherding / utility
  Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR
  ☆104Updated last month
• rpolicastro / scProportionTest
  ☆74Updated 2 years ago
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆154Updated last year
• MarioniLab / EmbryoTimecourse2018
  Data and analysis scripts for our Embryo Timecourse paper.
  ☆68Updated 6 years ago
• saezlab / progeny
  R package for Pathway RespOnsive GENe activity inference
  ☆113Updated 2 years ago
• cssmillie / ulcerative_colitis
  ☆63Updated 5 years ago
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆95Updated 7 months ago
• BlishLab / scriabin
  Analysis of cell-cell communication at single-cell resolution
  ☆106Updated last year
• RausellLab / CelliD
  Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.
  ☆95Updated 2 years ago
• Coolgenome / iTALK
  ☆65Updated 6 years ago
• omnideconv / omnideconv
  Unified access to several second-generation deconvolution methods
  ☆88Updated 2 weeks ago
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆92Updated last month
• single-cell-genetics / cellSNP
  Pileup biallelic SNPs from single-cell and bulk RNA-seq data
  ☆81Updated 3 years ago
• GreenleafLab / 10x-scATAC-2019
  Publication Page for Satpathy*, Granja* et al 2019
  ☆94Updated 5 years ago
• timoast / sinto
  Tools for single-cell data processing
  ☆131Updated last year
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 3 years ago
• KChen-lab / METAFlux
  ☆81Updated last year
• carmonalab / scGate
  marker-based purification of cell types from single-cell RNA-seq datasets
  ☆138Updated 5 months ago
• tanaylab / metacell
  Metacell - Single-cell mRNA Analysis
  ☆118Updated 11 months ago
• abelson-lab / scATOMIC
  Pan-Cancer Single Cell Classifier
  ☆83Updated last year
• phbradley / conga
  Clonotype Neighbor Graph Analysis
  ☆93Updated 4 months ago
• immunogenomics / starCAT
  Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs
  ☆92Updated last month
• carmonalab / STACAS
  R package for semi-supervised single-cell data integration
  ☆95Updated last month
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆76Updated 5 years ago
• immunogenomics / SCENT
  Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA
  ☆82Updated 9 months ago
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆49Updated last year