R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identify specificity groups in the T cell receptor repertoire based on local (motif sharing) and global (hamming distance) similarities.
☆29Oct 1, 2022Updated 3 years ago
Alternatives and similar repositories for turboGliph
Users that are interested in turboGliph are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆95Dec 4, 2020Updated 5 years ago
- Detecting TCR involved in immune responses from single RepSeq datasets☆28Jun 17, 2019Updated 7 years ago
- Clonotype Neighbor Graph Analysis☆100Jun 15, 2026Updated last month
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆67Nov 18, 2025Updated 8 months ago
- Antique or modern atlas-like depictions of non-linear dimensionality reduction for single cell data☆18Jun 19, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Using TCR and expression for sequence embedding☆63Jan 6, 2026Updated 6 months ago
- ☆15Jul 16, 2026Updated last week
- Ultrafast TCR clustering algorithm based on geometric isometry☆76Oct 16, 2024Updated last year
- 📝 [Paper/Tutorial] T-cell repertoire annotation and motif discovery☆14Sep 15, 2025Updated 10 months ago
- general repo that holds all analysis and figures for the thymus spatial atlas by Yayon, Kedlian, Boehme, Radtke and many more!☆12Nov 20, 2024Updated last year
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆87Oct 6, 2021Updated 4 years ago
- T cell Receptor and B cell Receptor assembly from single cell RNA sequencing data☆10Aug 27, 2017Updated 8 years ago
- A toolkit for single-cell immune profiling☆372Jul 9, 2026Updated last week
- ☆14Feb 17, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Single-cell immune repertoire trajectory analysis in R☆12Aug 8, 2025Updated 11 months ago
- Sequence-based prediction of peptide-TCR interactions using paired chain data☆15Feb 2, 2026Updated 5 months ago
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆69Mar 12, 2026Updated 4 months ago
- 🐶 hlabud: HLA genotype analysis in R☆19Apr 11, 2025Updated last year
- Decombinator: fast, error-correcting analysis of TCR repertoires☆28May 18, 2026Updated 2 months ago
- ☆13Dec 16, 2021Updated 4 years ago
- ☆20Sep 22, 2015Updated 10 years ago
- a Customized Proteogenomic Workflow for Neoantigen Prediction and Selection☆24Apr 6, 2022Updated 4 years ago
- ☆40Jun 24, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- CDR3 clustering module providing a new method for fast and accurate clustering of large data sets of CDR3 amino acid sequences, and offer…☆56Apr 3, 2024Updated 2 years ago
- ☆19Apr 20, 2025Updated last year
- supplementary tables and files☆11Oct 13, 2023Updated 2 years ago
- This R package for performing module repertoire analyses and generating fingerprint representations☆19Sep 16, 2021Updated 4 years ago
- Genotyping Immunoglobulin Heavy Chain Variable Genes using Short Read Data☆12May 9, 2025Updated last year
- ☆11Oct 25, 2022Updated 3 years ago
- An interpretable and flexible deep learning framework for single-T cell transcriptome and receptor analysis☆16Jun 9, 2026Updated last month
- functions and algorithms for single cell RNA-seq analyses☆11Jan 26, 2021Updated 5 years ago
- ☆16Feb 28, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- HyPhy tutorials☆11Apr 9, 2018Updated 8 years ago
- R package for RIVER (RNA-Informed Variant Effect on Regulation)☆12Mar 5, 2020Updated 6 years ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆37Mar 29, 2022Updated 4 years ago
- BLAST-like algorithm for R based on the nsearch library (https://github.com/stevschmid/nsearch)☆15Apr 24, 2026Updated 2 months ago
- This script use to analyze the immune repertoire sequenced by high throughtput sequencing☆28Dec 16, 2021Updated 4 years ago
- Scaling Single Cell Analysis to Millions of Cells☆296Jul 13, 2026Updated last week
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Mar 4, 2025Updated last year