R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identify specificity groups in the T cell receptor repertoire based on local (motif sharing) and global (hamming distance) similarities.
☆29Oct 1, 2022Updated 4 years ago
Alternatives and similar repositories for turboGliph
Users that are interested in turboGliph are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Detecting TCR involved in immune responses from single RepSeq datasets☆28Jun 17, 2019Updated 7 years ago
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆98Dec 4, 2020Updated 5 years ago
- Using TCR and expression for sequence embedding☆64Jan 6, 2026Updated 9 months ago
- R Shiny tool to interactively visualize and analyze antibody repertoires☆11Jan 8, 2024Updated 2 years ago
- 📝 [Paper/Tutorial] T-cell repertoire annotation and motif discovery☆14Sep 15, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- T cell Receptor and B cell Receptor assembly from single cell RNA sequencing data☆10Aug 27, 2017Updated 9 years ago
- ☆14Feb 17, 2022Updated 4 years ago
- GSEA plots in ggplot2☆10Jan 21, 2024Updated 2 years ago
- ☆15Jul 16, 2026Updated 3 months ago
- Clonotype Neighbor Graph Analysis☆100Jun 15, 2026Updated 4 months ago
- Single-cell immune repertoire trajectory analysis in R☆12Aug 8, 2025Updated last year
- Ultrafast TCR clustering algorithm based on geometric isometry☆78Oct 16, 2024Updated 2 years ago
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆71Nov 18, 2025Updated 11 months ago
- ☆12May 13, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A toolkit for single-cell immune profiling☆377Oct 16, 2026Updated last week
- Antique or modern atlas-like depictions of non-linear dimensionality reduction for single cell data☆18Jun 19, 2025Updated last year
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆87Oct 6, 2021Updated 5 years ago
- Genotyping Immunoglobulin Heavy Chain Variable Genes using Short Read Data☆13May 9, 2025Updated last year
- Trans-association between HLA and TCR-CDR3☆20Mar 29, 2023Updated 3 years ago
- Decombinator: fast, error-correcting analysis of TCR repertoires☆28May 18, 2026Updated 5 months ago
- ☆19Apr 20, 2025Updated last year
- general repo that holds all analysis and figures for the thymus spatial atlas by Yayon, Kedlian, Boehme, Radtke and many more!☆12Nov 20, 2024Updated last year
- My extensions for Seurat package☆10Jun 26, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Deconvolve individual immune cell types from cancer data☆10Apr 29, 2017Updated 9 years ago
- CDR3 clustering module providing a new method for fast and accurate clustering of large data sets of CDR3 amino acid sequences, and offer…☆57Apr 3, 2024Updated 2 years ago
- Gene-Term Enrichment Analysis (GeneTEA)☆11Jun 10, 2026Updated 4 months ago
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆71Mar 12, 2026Updated 7 months ago
- ☆49Jan 7, 2025Updated last year
- Sequence-based prediction of peptide-TCR interactions using paired chain data☆15Feb 2, 2026Updated 8 months ago
- Immune deconvolution of publicly available TCGA expression data☆11Jan 28, 2019Updated 7 years ago
- Standardise TR/MH/IG data☆14Oct 19, 2026Updated last week
- ☆14Jun 1, 2026Updated 4 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆10Jul 14, 2025Updated last year
- HLA-I ligand predictor☆47Mar 19, 2026Updated 7 months ago
- 🐶 hlabud: HLA genotype analysis in R☆19Apr 11, 2025Updated last year
- ☆23Oct 4, 2022Updated 4 years ago
- Summary statistics for repertoires☆18Feb 1, 2023Updated 3 years ago
- ☆16Jun 27, 2024Updated 2 years ago
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆21Aug 28, 2025Updated last year