Python library for immune repertoire analysis
☆17Jul 9, 2026Updated 2 weeks ago
Alternatives and similar repositories for pyrepseq
Users that are interested in pyrepseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Highly informative TCR representation model☆16Nov 26, 2025Updated 7 months ago
- Decombinator: fast, error-correcting analysis of TCR repertoires☆28May 18, 2026Updated 2 months ago
- ☆19Apr 20, 2025Updated last year
- pygor3 repository☆10Nov 20, 2025Updated 8 months ago
- A pipeline for complete and accurate recovery of TCR repertoires from high throughput sequencing data.☆23Sep 10, 2023Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- TCR validated database☆50May 5, 2025Updated last year
- Detecting TCR involved in immune responses from single RepSeq datasets☆28Jun 17, 2019Updated 7 years ago
- IMSEQ - IMmunogenetic SEQuence Analysis☆15Aug 10, 2018Updated 7 years ago
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆67Nov 18, 2025Updated 8 months ago
- Probabilistic Graphical Models in Python3.☆24Jun 4, 2025Updated last year
- Git-based antigen specificity database storage & management.☆155Jun 11, 2026Updated last month
- ☆18Nov 18, 2025Updated 8 months ago
- Tutorial files☆12Aug 7, 2024Updated last year
- ☆22Oct 4, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Software package for the automatic extraction of network data (graphs) from images.☆12Jun 27, 2019Updated 7 years ago
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆28Apr 22, 2025Updated last year
- ☆31Jun 24, 2025Updated last year
- Projected gradient optimization in python☆16Jun 21, 2018Updated 8 years ago
- B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction☆64Updated this week
- Infer selection pressures on features of amino acid CDR3 sequences.☆25Apr 17, 2024Updated 2 years ago
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆69Mar 12, 2026Updated 4 months ago
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…☆30Jan 31, 2023Updated 3 years ago
- A method for calculating single cell entropy and reconstructing cell differentiation lineage using single-cell RNA-seq data☆10May 26, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Code accompanying the paper "Information Directed Reward Learning for Reinforcement Learning" (NeurIPS 2021).☆13Nov 16, 2021Updated 4 years ago
- A bioinformatics best-practice analysis pipeline for epitope prediction and annotation☆54Updated this week
- Restricted Boltzmann Machines in Julia☆15Jun 30, 2017Updated 9 years ago
- CDR3 clustering module providing a new method for fast and accurate clustering of large data sets of CDR3 amino acid sequences, and offer…☆56Apr 3, 2024Updated 2 years ago
- ☆25Aug 15, 2023Updated 2 years ago
- Clonotype Neighbor Graph Analysis☆100Jun 15, 2026Updated last month
- An R shiny app to explore the influence of the normality and independence assumptions (and their violation) on the validity (i.e. the typ…☆13Aug 24, 2020Updated 5 years ago
- Single cell pipelines☆16Jun 14, 2026Updated last month
- The code for running the analysis component of CSI-Microbe☆11Jan 3, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A collection of resources and knowledge for analysis of scATAC+scRNA multi omics data☆10Sep 16, 2022Updated 3 years ago
- Tumor-Infiltrating CD8 Lymphocytes states prediction☆14Feb 7, 2024Updated 2 years ago
- ☆19Updated this week
- AIRR Community Data Standards☆41Jul 10, 2026Updated last week
- Ultrafast TCR clustering algorithm based on geometric isometry☆76Oct 16, 2024Updated last year
- imNet: a Sequence Network Construction Toolkit☆20Jul 7, 2020Updated 6 years ago
- Literature mining for T cell relations☆23Aug 5, 2022Updated 3 years ago