theislab / tcellmatchLinks
☆40Updated 5 years ago
Alternatives and similar repositories for tcellmatch
Users that are interested in tcellmatch are comparing it to the libraries listed below
Sorting:
- flexible CDR based distance metrics☆67Updated last year
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆59Updated last month
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 2 years ago
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆97Updated 4 years ago
- Code related to the Celligner manuscript☆46Updated 4 years ago
- Using TCR and expression for sequence embedding☆59Updated last month
- ☆49Updated 3 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Updated 6 years ago
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆86Updated 4 years ago
- Deep Learning Method to Identify Cancer Associated TCRs☆47Updated 3 years ago
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…☆30Updated 2 years ago
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆59Updated 4 years ago
- ACTIONet single-cell analysis framework☆42Updated last year
- Benchmark of GRNs using the GRETA pipeline☆28Updated last week
- ☆65Updated 2 years ago
- Clonotype Neighbor Graph Analysis☆92Updated last month
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆29Updated 5 months ago
- Ultrafast TCR clustering algorithm based on geometric isometry☆69Updated 11 months ago
- ☆29Updated 3 months ago
- Code and data used in The Great Repertoire Project☆29Updated 4 years ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆69Updated 2 weeks ago
- Highly specific clustering of T cell receptor CDR3s☆43Updated 3 years ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆37Updated 2 years ago
- Molecular interactions inference from single-cell multi-omics data☆27Updated last week
- Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing da…☆48Updated 7 months ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆95Updated 6 years ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆30Updated 8 months ago
- CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…☆47Updated last month
- predicting peptide and TCR interaction☆20Updated 4 years ago
- ☆54Updated 11 months ago