theislab / tcellmatchLinks
☆40Updated 4 years ago
Alternatives and similar repositories for tcellmatch
Users that are interested in tcellmatch are comparing it to the libraries listed below
Sorting:
- flexible CDR based distance metrics☆63Updated 10 months ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 2 years ago
- ☆29Updated 6 months ago
- ☆53Updated 7 months ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- Using TCR and expression for sequence embedding☆56Updated 4 months ago
- Deep Learning Method to Identify Cancer Associated TCRs☆47Updated 2 years ago
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…☆30Updated 2 years ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆32Updated 3 years ago
- predicting peptide and TCR interaction☆20Updated 4 years ago
- 📝 [Paper/Tutorial] T-cell repertoire annotation and motif discovery☆13Updated 5 years ago
- Clonotype Neighbor Graph Analysis☆89Updated this week
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆84Updated 3 years ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆41Updated 2 years ago
- CDR3 clustering module providing a new method for fast and accurate clustering of large data sets of CDR3 amino acid sequences, and offer…☆54Updated last year
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆53Updated last month
- ACTIONet single-cell analysis framework☆41Updated 9 months ago
- Code and data used in The Great Repertoire Project☆30Updated 4 years ago
- HLA-II ligand predictor.☆43Updated 2 years ago
- Geometry-preserving random sampling☆87Updated 7 months ago
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆93Updated 4 years ago
- ☆48Updated 2 years ago
- BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data☆42Updated 9 months ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆34Updated 3 years ago
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆53Updated 3 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆63Updated last year
- R package for the analysis of single-cell immune repertoires☆42Updated 4 months ago
- Processing of single cell RNAseq data for the recovery of TCRs in python☆28Updated 4 years ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆38Updated this week
- Code for reproducing the Sei manuscript results☆17Updated 3 years ago