Alternatives and similar repositories for tcellmatch

Users that are interested in tcellmatch are comparing it to the libraries listed below

• kmayerb / tcrdist3
  flexible CDR based distance metrics
  ☆69Updated 3 weeks ago
• emmijokinen / TCRconv
  TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…
  ☆25Updated 3 years ago
• JamieHeather / stitchr
  Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info
  ☆60Updated 3 months ago
• phbradley / tcr-dist
  Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)
  ☆86Updated 4 years ago
• s175573 / DeepCAT
  Deep Learning Method to Identify Cancer Associated TCRs
  ☆47Updated 3 years ago
• emmijokinen / TCRGP
  TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…
  ☆30Updated 2 years ago
• immunoengineer / gliph
  Grouping of Lymphocyte Interactions by Paratope Hotspots
  ☆96Updated 5 years ago
• shmohammadi86 / ACTIONet
  ACTIONet single-cell analysis framework
  ☆44Updated last year
• uio-bmi / immuneML
  immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.
  ☆73Updated 2 weeks ago
• statbiophys / OLGA
  Compute generation probabilities of CDR3 amino acid and nucleotide sequences
  ☆62Updated 2 weeks ago
• brineylab / grp-paper
  Code and data used in The Great Repertoire Project
  ☆29Updated 4 years ago
• s175573 / GIANA
  Ultrafast TCR clustering algorithm based on geometric isometry
  ☆69Updated last year
• s175573 / iSMART
  Highly specific clustering of T cell receptor CDR3s
  ☆43Updated 3 years ago
• BorchLab / Trex
  Using TCR and expression for sequence embedding
  ☆60Updated 3 months ago
• epigen / KPNN
  Knowledge-primed neural networks
  ☆38Updated 2 years ago
• mnielLab / netTCR
  predicting peptide and TCR interaction
  ☆20Updated 4 years ago
• IEDB / TCRMatch
  ☆31Updated 5 months ago
• antigenomics / tcr-annotation-methodology
  📝 [Paper/Tutorial] T-cell repertoire annotation and motif discovery
  ☆14Updated 2 months ago
• saezlab / greta
  Benchmark of GRNs using the GRETA pipeline
  ☆29Updated last week
• antigenomics / vdjmatch
  ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities
  ☆39Updated 7 years ago
• josephreplogle / guide_calling
  Tools for sgRNA calling in direct capture Perturb-seq data
  ☆39Updated 2 years ago
• czbiohub-sf / tabula-sapiens
  Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens
  ☆42Updated 3 months ago
• SchubertLab / mvTCR
  ☆56Updated last year
• mhorlbeck / ScreenProcessing
  ☆67Updated 2 years ago
• phbradley / conga
  Clonotype Neighbor Graph Analysis
  ☆93Updated 3 months ago
• cantinilab / HuMMuS
  Molecular interactions inference from single-cell multi-omics data
  ☆28Updated last month
• broadinstitute / Celligner_ms
  Code related to the Celligner manuscript
  ☆46Updated 5 years ago
• p-koo / creme-nn
  https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2
  ☆32Updated 10 months ago
• Papatheodorou-Group / BENGAL
  Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets
  ☆41Updated 4 months ago
• cole-trapnell-lab / sci-plex
  repository containing analysis scripts and auxiliary files
  ☆36Updated 5 years ago