Alternatives and similar repositories for tcellmatch:

Users that are interested in tcellmatch are comparing it to the libraries listed below

• kmayerb / tcrdist3
  flexible CDR based distance metrics
  ☆58Updated 7 months ago
• emmijokinen / TCRconv
  TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…
  ☆25Updated 2 years ago
• BorchLab / Trex
  Using TCR and expression for sequence embedding
  ☆53Updated 2 months ago
• IdoSpringer / ERGO-II
  ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction
  ☆32Updated 3 years ago
• SchubertLab / mvTCR
  ☆51Updated 5 months ago
• s175573 / DeepCAT
  Deep Learning Method to Identify Cancer Associated TCRs
  ☆46Updated 2 years ago
• antigenomics / vdjmatch
  ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities
  ☆38Updated 6 years ago
• antigenomics / tcr-annotation-methodology
  📝 [Paper/Tutorial] T-cell repertoire annotation and motif discovery
  ☆13Updated 4 years ago
• alexyermanos / Platypus
  R package for the analysis of single-cell immune repertoires
  ☆42Updated 2 months ago
• emmijokinen / TCRGP
  TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…
  ☆30Updated 2 years ago
• immunoengineer / gliph
  Grouping of Lymphocyte Interactions by Paratope Hotspots
  ☆91Updated 4 years ago
• phbradley / conga
  Clonotype Neighbor Graph Analysis
  ☆86Updated 2 weeks ago
• cantinilab / HuMMuS
  Molecular interactions inference from single-cell multi-omics data
  ☆22Updated 5 months ago
• mnielLab / netTCR
  predicting peptide and TCR interaction
  ☆20Updated 4 years ago
• decomverse / ACTIONet
  ACTIONet single-cell analysis framework
  ☆38Updated 6 months ago
• IEDB / TCRMatch
  ☆29Updated 4 months ago
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆61Updated 11 months ago
• broadinstitute / Celligner_ms
  Code related to the Celligner manuscript
  ☆46Updated 4 years ago
• Papatheodorou-Group / BENGAL
  Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets
  ☆36Updated last year
• GreiffLab / immuneSIM
  ☆37Updated last year
• saezlab / greta
  Benchmark of GRNs using the GRETA pipeline
  ☆23Updated 3 weeks ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆43Updated 2 years ago
• statbiophys / OLGA
  Compute generation probabilities of CDR3 amino acid and nucleotide sequences
  ☆51Updated 3 years ago
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆80Updated 5 months ago
• MiraldiLab / maxATAC
  Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks
  ☆28Updated last month
• jcao89757 / TESSA
  Mapping the Functional Landscape of TCR Repertoire
  ☆34Updated 3 years ago
• andrewrech / antigen.garnish
  ☆47Updated 2 years ago
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆51Updated last month
• phbradley / tcr-dist
  Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)
  ☆81Updated 3 years ago
• noamteyssier / adpbulk
  pseudobulking on an AnnData object
  ☆29Updated 3 weeks ago