theislab / tcellmatchLinks
☆41Updated 5 years ago
Alternatives and similar repositories for tcellmatch
Users that are interested in tcellmatch are comparing it to the libraries listed below
Sorting:
- flexible CDR based distance metrics☆69Updated last month
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆26Updated 3 years ago
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆64Updated 5 months ago
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆96Updated 5 years ago
- Deep Learning Method to Identify Cancer Associated TCRs☆46Updated 3 years ago
- Code and data used in The Great Repertoire Project☆29Updated 4 years ago
- ☆31Updated 6 months ago
- Code related to the Celligner manuscript☆46Updated 5 years ago
- ACTIONet single-cell analysis framework☆44Updated last year
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆86Updated 4 years ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆30Updated last month
- Ultrafast TCR clustering algorithm based on geometric isometry☆71Updated last year
- A database of T-cell receptor sequences☆11Updated 5 months ago
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆63Updated 2 months ago
- ☆69Updated 2 years ago
- Using TCR and expression for sequence embedding☆62Updated 2 weeks ago
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…☆30Updated 2 years ago
- Benchmark of GRNs using the GRETA pipeline☆30Updated this week
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Updated 7 years ago
- Clonotype Neighbor Graph Analysis☆93Updated 5 months ago
- High-definition modeling of chromatin + transcriptomics data☆26Updated 9 months ago
- ☆48Updated 3 years ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆39Updated 2 years ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- model-based understanding of single-cell CRISPR screening☆26Updated last year
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆67Updated 6 months ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆72Updated 2 years ago
- predicting peptide and TCR interaction☆20Updated 4 years ago
- Highly specific clustering of T cell receptor CDR3s☆43Updated 3 years ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆73Updated this week