theislab / tcellmatchLinks
☆40Updated 5 years ago
Alternatives and similar repositories for tcellmatch
Users that are interested in tcellmatch are comparing it to the libraries listed below
Sorting:
- flexible CDR based distance metrics☆66Updated last year
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆57Updated 3 weeks ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 2 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- Code related to the Celligner manuscript☆46Updated 4 years ago
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆97Updated 4 years ago
- ☆29Updated 2 months ago
- Using TCR and expression for sequence embedding☆58Updated 3 weeks ago
- Ultrafast TCR clustering algorithm based on geometric isometry☆68Updated 11 months ago
- Deep Learning Method to Identify Cancer Associated TCRs☆47Updated 3 years ago
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆86Updated 3 years ago
- ☆49Updated 3 years ago
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…☆30Updated 2 years ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆29Updated 5 months ago
- Code and data used in The Great Repertoire Project☆29Updated 4 years ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆68Updated 2 weeks ago
- CDR3 clustering module providing a new method for fast and accurate clustering of large data sets of CDR3 amino acid sequences, and offer…☆54Updated last year
- Clonotype Neighbor Graph Analysis☆90Updated 3 weeks ago
- Molecular interactions inference from single-cell multi-omics data☆27Updated 2 weeks ago
- ☆38Updated last year
- Tools for sgRNA calling in direct capture Perturb-seq data☆37Updated 2 years ago
- ☆65Updated 2 years ago
- R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…☆24Updated 2 years ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆42Updated 3 weeks ago
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆58Updated 4 years ago
- Highly specific clustering of T cell receptor CDR3s☆43Updated 3 years ago
- ☆54Updated 10 months ago
- A database of T-cell receptor sequences☆10Updated last month
- ACTIONet single-cell analysis framework☆42Updated last year
- Inference of TCR motifs☆32Updated 2 months ago