A database of T-cell receptor sequences
☆11Aug 6, 2025Updated 7 months ago
Alternatives and similar repositories for TCRdb
Users that are interested in TCRdb are comparing it to the libraries listed below
Sorting:
- Generic TCR-epitope recognition prediction using CNN approach on both known and novel epitopes☆17May 22, 2023Updated 2 years ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆36Mar 29, 2022Updated 3 years ago
- ☆18Nov 18, 2025Updated 4 months ago
- ☆41Aug 18, 2020Updated 5 years ago
- Invariant Representation learning☆20Jun 26, 2024Updated last year
- Reworked clustering metrics for assessing performance in imbalanced settings☆18Jun 3, 2024Updated last year
- Ultrafast TCR clustering algorithm based on geometric isometry☆74Oct 16, 2024Updated last year
- Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2…☆30Jul 12, 2025Updated 8 months ago
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆64Mar 12, 2026Updated last week
- 编码の日常☆17Dec 12, 2022Updated 3 years ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆26Oct 18, 2022Updated 3 years ago
- ☆12Mar 22, 2024Updated last year
- ☆22Oct 4, 2022Updated 3 years ago
- Code and software used to design de novo protein nanomachines. Supplementary material for "Computational design of nanoscale rotational m…☆10Mar 19, 2022Updated 4 years ago
- CiteFuse:☆28Feb 7, 2023Updated 3 years ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆34Apr 1, 2022Updated 3 years ago
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆11Jul 8, 2021Updated 4 years ago
- 📂 HLA allele frequencies in tab-delimited format, downloaded from AFND.☆23Apr 23, 2024Updated last year
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆10Jan 21, 2022Updated 4 years ago
- Learning cell communication from spatial graphs of cells☆113Jan 15, 2024Updated 2 years ago
- Biological sequence visualization functions in R☆13Apr 16, 2024Updated last year
- call copy number from WES(WXS)☆11May 10, 2021Updated 4 years ago
- TEINet: a deep learning framework for prediction of TCR-epitope binding specificity☆16Jun 30, 2023Updated 2 years ago
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…☆30Jan 31, 2023Updated 3 years ago
- Predict scalar coupling in molecules☆15Mar 14, 2021Updated 5 years ago
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆90Jun 14, 2022Updated 3 years ago
- stageR package☆13Feb 28, 2023Updated 3 years ago
- Python-based web scraper for extracting gene summaries from GeneCards.☆11Oct 3, 2024Updated last year
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Mar 7, 2025Updated last year
- Simple and quick FastQ and FastA tool for file reading and conversion☆17Jul 11, 2014Updated 11 years ago
- SOAP-HLA is a flow of sequencing data analysis pipeline to type all of the HLA genes in IMGT/HLA database using capture sequenced data or…☆10Jun 3, 2020Updated 5 years ago
- ☆40Dec 29, 2022Updated 3 years ago
- ☆14Oct 23, 2024Updated last year
- runjob is a program for managing a group of related jobs running on a compute cluster☆11Mar 13, 2026Updated last week
- Riborex: Fast and flexible identification of differential translation from Ribo-seq data☆12Apr 9, 2021Updated 4 years ago
- Protein function prediction using protein structures and deep graph neural networks.☆20Jan 24, 2025Updated last year
- ☆12Jan 29, 2025Updated last year
- NeoDisc - A computational pipeline for the identification and prioritization of immunogenic tumor-specific HLA-I and -II antigens from ge…☆14Oct 8, 2024Updated last year
- Synthesis of molecules from fragments into larger molecules using graph-based representations and techniques.☆13Nov 25, 2015Updated 10 years ago