A database of T-cell receptor sequences
☆11Aug 6, 2025Updated 6 months ago
Alternatives and similar repositories for TCRdb
Users that are interested in TCRdb are comparing it to the libraries listed below
Sorting:
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆36Mar 29, 2022Updated 3 years ago
- Reworked clustering metrics for assessing performance in imbalanced settings☆18Jun 3, 2024Updated last year
- Generic TCR-epitope recognition prediction using CNN approach on both known and novel epitopes☆17May 22, 2023Updated 2 years ago
- ☆41Aug 18, 2020Updated 5 years ago
- Ultrafast TCR clustering algorithm based on geometric isometry☆73Oct 16, 2024Updated last year
- 📂 HLA allele frequencies in tab-delimited format, downloaded from AFND.☆23Apr 23, 2024Updated last year
- ☆22Oct 4, 2022Updated 3 years ago
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆64Aug 19, 2025Updated 6 months ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆26Oct 18, 2022Updated 3 years ago
- Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2…☆30Jul 12, 2025Updated 7 months ago
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…☆30Jan 31, 2023Updated 3 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Mar 7, 2025Updated 11 months ago
- CiteFuse:☆28Feb 7, 2023Updated 3 years ago
- ☆12Dec 14, 2021Updated 4 years ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆34Apr 1, 2022Updated 3 years ago
- Pytorch implementation of scDeepCluster for Single Cell RNA-seq data☆34Jul 10, 2024Updated last year
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆89Jun 14, 2022Updated 3 years ago
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆11Jul 8, 2021Updated 4 years ago
- A collection of functions compatible with the Opentrons API☆10Oct 28, 2022Updated 3 years ago
- ☆11Updated this week
- This repo is archived, the these workflows are still available in the GATK repository under the scripts directory. The workflows are also…☆11Mar 9, 2020Updated 5 years ago
- Python-based web scraper for extracting gene summaries from GeneCards.☆11Oct 3, 2024Updated last year
- Code and software used to design de novo protein nanomachines. Supplementary material for "Computational design of nanoscale rotational m…☆10Mar 19, 2022Updated 3 years ago
- Combined clonality and transcriptome scRNAseq clustering method☆11Dec 3, 2022Updated 3 years ago
- ☆38Oct 3, 2025Updated 4 months ago
- ☆43Feb 9, 2024Updated 2 years ago
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆10Jan 21, 2022Updated 4 years ago
- ☆13Oct 23, 2024Updated last year
- SOAP-HLA is a flow of sequencing data analysis pipeline to type all of the HLA genes in IMGT/HLA database using capture sequenced data or…☆10Jun 3, 2020Updated 5 years ago
- Codes to regenerate figures for mutagen paper☆12Apr 8, 2021Updated 4 years ago
- an online cancer cell line catalogue integrating HLA type, predicted neo-epitopes, virus and gene expression☆12Feb 26, 2024Updated 2 years ago
- Functions to extract information from Oxford Nanopore sequencing data and alignments☆11Dec 4, 2025Updated 2 months ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 3 years ago
- A fast and efficient short read mapper☆13Nov 7, 2021Updated 4 years ago
- Tools for the analysis of heterogeneous tissues☆14Aug 24, 2022Updated 3 years ago
- ☆14Aug 5, 2022Updated 3 years ago
- runjob is a program for managing a group of related jobs running on a compute cluster☆11Jan 4, 2026Updated last month
- SIMS: Scalable, Interpretable Models for Cell Annotation of large scale single-cell RNA-seq data☆10Dec 3, 2025Updated 2 months ago
- Multi-nucleotide Variation Annotation Corrector☆11Dec 13, 2022Updated 3 years ago