GuoBioinfoLab / TCRdbLinks
A database of T-cell receptor sequences
☆10Updated 3 weeks ago
Alternatives and similar repositories for TCRdb
Users that are interested in TCRdb are comparing it to the libraries listed below
Sorting:
- ☆40Updated 5 years ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 2 years ago
- flexible CDR based distance metrics☆66Updated last year
- Saluki, a method to predict mRNA half-lives from sequence☆25Updated 2 years ago
- Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing da…☆48Updated 6 months ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆28Updated 4 months ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆29Updated 7 months ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆66Updated 2 years ago
- ☆49Updated 3 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- RAGE-seq scripts☆18Updated 4 years ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆21Updated 2 years ago
- Code for reproducing the Sei manuscript results☆17Updated 3 years ago
- ☆38Updated last year
- Comparison of Adaptive Immune Receptor Repertoires☆27Updated 7 months ago
- model-based understanding of single-cell CRISPR screening☆24Updated 8 months ago
- PRedictor of IMmunogenic Epitopes☆24Updated 3 months ago
- splicing and feature maps for RBPs☆25Updated 3 years ago
- Multi-Omics Peptide Generator☆23Updated this week
- High-definition modeling of chromatin + transcriptomics data☆24Updated 4 months ago
- ☆18Updated 2 years ago
- ☆18Updated last year
- HLA-II ligand predictor.☆44Updated 2 years ago
- code repository for Lagattuta et al. "Repertoire analyses reveal T cell receptor sequence features that influence T cell fate." Nat. Imm.…☆13Updated 7 months ago
- ☆35Updated 2 years ago
- Molecular interactions inference from single-cell multi-omics data☆27Updated 2 months ago
- Interactive software tool for the assignment of cell types in single-cell studies.☆34Updated 2 years ago
- ☆23Updated 6 months ago
- A neural network model to predict splice site usage and splicing-altering mutations☆15Updated last month