GuoBioinfoLab / TCRdb
A database of T-cell receptor sequences
☆9Updated 4 years ago
Alternatives and similar repositories for TCRdb:
Users that are interested in TCRdb are comparing it to the libraries listed below
- Comparison of Adaptive Immune Receptor Repertoires☆26Updated 2 months ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago
- ☆47Updated 2 years ago
- A toolkit for optimal workflow recommendation for proteomics data differential expression analysis☆12Updated 6 months ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆21Updated 2 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆12Updated last year
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆28Updated 2 weeks ago
- Inference of TCR motifs☆30Updated last month
- ☆17Updated 9 months ago
- an online cancer cell line catalogue integrating HLA type, predicted neo-epitopes, virus and gene expression☆10Updated last year
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 2 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆26Updated last year
- ☆17Updated 9 months ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆32Updated 3 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated last year
- RAGE-seq scripts☆18Updated 3 years ago
- ☆37Updated last year
- Absolve antibody variable domain sequence analysis☆16Updated 6 years ago
- ☆18Updated 2 years ago
- 📂 HLA allele frequencies in tab-delimited format, downloaded from AFND.☆20Updated last year
- This repository aims to serve as an index of the work described at Salmen & De Jonghe et. al 2022☆22Updated 3 years ago
- simplified cellranger for long-read data☆18Updated last week
- ☆38Updated 4 years ago
- ☆18Updated this week
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 2 years ago
- ☆16Updated last year
- Tools for sgRNA calling in direct capture Perturb-seq data☆32Updated last year
- Saluki, a method to predict mRNA half-lives from sequence☆24Updated 2 years ago
- ☆15Updated 2 years ago