xiaolei-lab / rMVPLinks
A Memory-efficient, Visualization-enhanced, and Parallel-accelerated Tool For Genome-Wide Association Study
☆315Updated 2 months ago
Alternatives and similar repositories for rMVP
Users that are interested in rMVP are comparing it to the libraries listed below
Sorting:
- Genome Association Predict Integrate Tools☆215Updated 3 weeks ago
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆192Updated 4 months ago
- karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome☆347Updated 5 months ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆200Updated last year
- Tools to work with variant call format files☆264Updated 3 weeks ago
- 📊 Circular and Rectangular Manhattan Plot☆603Updated 7 months ago
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆321Updated 2 years ago
- ChIP peak Annotation, Comparison and Visualization☆244Updated 2 weeks ago
- Codebook from my GWAS cookbook☆193Updated 3 years ago
- ☆188Updated 5 years ago
- Visualize and annotate genomic coverage with ggplot2☆268Updated 9 months ago
- an R/shiny application for creation of Circos plot interactively☆158Updated 3 years ago
- Tutorials on phylogenetic and phylogenomic inference☆390Updated 2 years ago
- Eigen tools by Nick Patterson and Alkes Price lab☆192Updated 2 years ago
- This Snakemake pipeline implements the GATK best-practices workflow☆260Updated 2 years ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆274Updated 2 years ago
- General tools for genomic analyses.☆378Updated 8 months ago
- Read trimming tool for Illumina NGS data.☆147Updated 10 years ago
- R package for DNA methylation analysis☆240Updated 2 months ago
- Genome Assembly and Annotation Service code☆216Updated last year
- A comprehensive R package for deep mining microbiome☆190Updated 2 weeks ago
- TransDecoder source☆298Updated last month
- Program for analysing NGS data.☆248Updated 8 months ago
- An R package for creating Q-Q and manhattan plots from GWAS results☆170Updated 3 weeks ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆267Updated 2 weeks ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆250Updated 4 months ago
- Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)☆355Updated 9 months ago
- parallel fastq-dump wrapper☆299Updated 2 years ago
- Low Coverage Calling of Genotypes☆162Updated this week
- Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.☆280Updated 3 months ago