A Memory-efficient, Visualization-enhanced, and Parallel-accelerated Tool For Genome-Wide Association Study
โ317Sep 20, 2025Updated 5 months ago
Alternatives and similar repositories for rMVP
Users that are interested in rMVP are comparing it to the libraries listed below
Sorting:
- Genome Association Predict Integrate Toolsโ220Dec 3, 2025Updated 3 months ago
- ๐ Circular and Rectangular Manhattan Plotโ623Feb 25, 2026Updated last week
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millionsโ39Mar 24, 2025Updated 11 months ago
- Code to compute the XP-CLR statistic to infer natural selectionโ102Jun 13, 2022Updated 3 years ago
- Individual-Level, Summary-Level and Single-Step Bayesian Regression Models for Genomic Prediction and Genome-Wide Association Studiesโ57Sep 6, 2025Updated 5 months ago
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF filesโ206Jul 5, 2025Updated 8 months ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) filesโ203Aug 15, 2024Updated last year
- A haplotype analysis toolkit for natural variation study.โ31Oct 3, 2023Updated 2 years ago
- Data Simulation for Life Science and Breedingโ42Jun 13, 2025Updated 8 months ago
- Detailed bioinformatics scripts and methods used in the NAM genome paper.โ91Jan 14, 2025Updated last year
- Kinship Adjusted Multi-Loci Best Linear Unbiased Predictionโ47Apr 8, 2025Updated 10 months ago
- HIBLUP is an Integration of Statistical Methods Under BLUP Framework for Genomic Selection and Predictionโ29Oct 15, 2021Updated 4 years ago
- Example for TWASโ12Jan 23, 2022Updated 4 years ago
- The R tool associated with 3VmrMLM, a comprehensive GWAS method for identifying QTNs, QTN-by-environment interactions, and QTN-by-QTN intโฆโ34Dec 29, 2025Updated 2 months ago
- โ11Dec 15, 2025Updated 2 months ago
- Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)โ24Sep 26, 2025Updated 5 months ago
- scripts for the project of seven thaliana genomes assemblyโ42May 22, 2021Updated 4 years ago
- ไบไปฃๆตๅบๆฐๆฎๅๆโ376Dec 6, 2023Updated 2 years ago
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Formaโฆโ103Aug 27, 2025Updated 6 months ago
- An innovative GWAS procedure for studies on germplasm population and plant breedingโ14Nov 16, 2020Updated 5 years ago
- Scripts to do haplotype analysis on pan genomes.โ20Sep 24, 2020Updated 5 years ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) filesโ29Aug 15, 2024Updated last year
- Bulked-Segregant Analysis using vcf file with or without parentsโ32Dec 20, 2024Updated last year
- Build haplotye and generate figuresโ19Nov 4, 2025Updated 4 months ago
- Genome-wide Efficient Mixed Model Associationโ391Dec 10, 2025Updated 2 months ago
- โ114Oct 3, 2025Updated 5 months ago
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysisโ329Jul 7, 2023Updated 2 years ago
- QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysisโ82Jan 20, 2020Updated 6 years ago
- tomato graph pangenomeโ88Dec 13, 2022Updated 3 years ago
- โ21Nov 15, 2024Updated last year
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/speciesโ185Dec 19, 2024Updated last year
- PyRice is an API to access some Rice public databases at the same time with consistent output. PyRice design is modular and implements a โฆโ13Dec 12, 2024Updated last year
- โ12Apr 10, 2021Updated 4 years ago
- Python library to facilitate genome assembly, annotation, and comparative genomicsโ890Updated this week
- Extensive de-novo TE Annotatorโ430Updated this week
- A library for running k-mers based GWASโ125Oct 29, 2024Updated last year
- iTAKโ48May 22, 2024Updated last year
- Multi-level visualization of genomic statistical variables on rectangular chromosomesโ110Feb 24, 2026Updated last week
- SNPbinner is a utility for the generation of genotype crossover points and binmaps based on SNP data across recombinant inbred lines.โ39Apr 5, 2019Updated 6 years ago