Alternatives and similar repositories for rMVP

Users that are interested in rMVP are comparing it to the libraries listed below

• jiabowang / GAPIT
  Genome Association Predict Integrate Tools
  ☆217Updated 3 weeks ago
• BGI-shenzhen / LDBlockShow
  LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files
  ☆196Updated 5 months ago
• bernatgel / karyoploteR
  karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
  ☆351Updated 6 months ago
• JoniColeman / gwas_scripts
  Codebook from my GWAS cookbook
  ☆193Updated 3 years ago
• knausb / vcfR
  Tools to work with variant call format files
  ☆264Updated 2 months ago
• showteeth / ggcoverage
  Visualize and annotate genomic coverage with ggplot2
  ☆270Updated 11 months ago
• TickingClock1992 / RIdeogram
  ☆190Updated 5 years ago
• YinLiLin / CMplot
  📊 Circular and Rectangular Manhattan Plot
  ☆608Updated 8 months ago
• BGI-shenzhen / PopLDdecay
  PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files
  ☆201Updated last year
• edgardomortiz / vcf2phylip
  Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
  ☆327Updated 2 years ago
• YuLab-SMU / MicrobiotaProcess
  A comprehensive R package for deep mining microbiome
  ☆190Updated last month
• YuLab-SMU / ChIPseeker
  ChIP peak Annotation, Comparison and Visualization
  ☆247Updated last month
• YaoLab-Bioinfo / shinyCircos
  an R/shiny application for creation of Circos plot interactively
  ☆158Updated 3 years ago
• DReichLab / EIG
  Eigen tools by Nick Patterson and Alkes Price lab
  ☆195Updated 2 years ago
• mmatschiner / tutorials
  Tutorials on phylogenetic and phylogenomic inference
  ☆394Updated 2 years ago
• Magdoll / cDNA_Cupcake
  Miscellaneous collection of Python and R scripts for processing Iso-Seq data
  ☆278Updated 2 years ago
• PacificBiosciences / IsoSeq
  Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
  ☆227Updated 5 months ago
• simonhmartin / genomics_general
  General tools for genomic analyses.
  ☆380Updated 10 months ago
• mhammell-laboratory / TEtranscripts
  A package for including transposable elements in differential enrichment analysis of sequencing datasets.
  ☆273Updated last month
• ewels / sra-explorer
  Web application to explore the Sequence Read Archive.
  ☆218Updated 5 months ago
• wyp1125 / MCScanX
  MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!
  ☆272Updated 2 months ago
• im3sanger / dndscv
  dN/dS methods to quantify selection in cancer and somatic evolution
  ☆230Updated 7 months ago
• TransDecoder / TransDecoder
  TransDecoder source
  ☆301Updated 3 months ago
• al2na / methylKit
  R package for DNA methylation analysis
  ☆244Updated 3 months ago
• YongxinLiu / Note
  ☆125Updated 4 years ago
• NBISweden / GAAS
  Genome Assembly and Annotation Service code
  ☆217Updated 2 years ago
• YongxinLiu / Metagenome
  Metagenome analysis pipeline
  ☆100Updated 4 years ago
• suhrig / arriba
  Fast and accurate gene fusion detection from RNA-Seq data
  ☆257Updated 3 months ago
• snakemake-workflows / dna-seq-gatk-variant-calling
  This Snakemake pipeline implements the GATK best-practices workflow
  ☆262Updated 2 years ago
• cafferychen777 / ggpicrust2
  Make Picrust2 Output Analysis and Visualization Easier
  ☆172Updated this week