xiaolei-lab / rMVPLinks
A Memory-efficient, Visualization-enhanced, and Parallel-accelerated Tool For Genome-Wide Association Study
☆301Updated last month
Alternatives and similar repositories for rMVP
Users that are interested in rMVP are comparing it to the libraries listed below
Sorting:
- Genome Association Predict Integrate Tools☆205Updated this week
- karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome☆324Updated last month
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆192Updated 11 months ago
- 📊 Circular and Rectangular Manhattan Plot☆581Updated 3 months ago
- ChIP peak Annotation, Comparison and Visualization☆237Updated 2 months ago
- Codebook from my GWAS cookbook☆192Updated 3 years ago
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆181Updated last week
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆312Updated 2 years ago
- Tools to work with variant call format files☆260Updated 4 months ago
- ☆175Updated 4 years ago
- ☆125Updated 3 years ago
- Visualize and annotate genomic coverage with ggplot2☆260Updated 5 months ago
- R package for DNA methylation analysis☆232Updated 4 months ago
- A comprehensive R package for deep mining microbiome☆190Updated 2 weeks ago
- Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.☆467Updated last week
- Tutorials on phylogenetic and phylogenomic inference☆386Updated last year
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆271Updated last year
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆254Updated 5 months ago
- Metagenome analysis pipeline☆98Updated 3 years ago
- an R/shiny application for creation of Circos plot interactively☆157Updated 2 years ago
- Web application to explore the Sequence Read Archive.☆218Updated 3 months ago
- Easy Amplicon data analysis pipeline☆306Updated last week
- R package for microbiome biomarker discovery☆186Updated 4 months ago
- dN/dS methods to quantify selection in cancer and somatic evolution☆222Updated 2 months ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆215Updated this week
- Using R language in microbiome analysis☆331Updated 2 years ago
- TransDecoder source☆292Updated 9 months ago
- Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.☆273Updated last month
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆234Updated 2 months ago
- This Snakemake pipeline implements the GATK best-practices workflow☆254Updated 2 years ago